Comparative GO Graph (mouse, human, rat, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes RAB1B
  • Mouse genes Rab1b
  • Rat genes Rab1b
  • Zfish genes rab1ba,rab1bb
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Rab1b

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0005525	GTP binding	RAB1B	IDA		Human	PMID:20937701
Molecular Function	GO:0005515	protein binding	RAB1B	IPI	UniProtKB:Q8N2Y8	Human	PMID:15796781
Molecular Function	GO:0005515	protein binding	RAB1B	IPI	UniProtKB:Q01968	Human	PMID:21378754
Molecular Function	GO:0005515	protein binding	RAB1B	IPI	UniProtKB:Q5ZWZ3	Human	PMID:22011575
Molecular Function	GO:0005515	protein binding	RAB1B	IPI	UniProtKB:Q01968	Human	PMID:25107275
Molecular Function	GO:0005515	protein binding	RAB1B	IPI	UniProtKB:Q5S007	Human	PMID:26824392
Molecular Function	GO:0005515	protein binding	RAB1B	IPI	UniProtKB:Q9UKF7-1	Human	PMID:26977884
Molecular Function	GO:0005515	protein binding	RAB1B	IPI	UniProtKB:P47224	Human	PMID:28514442
Molecular Function	GO:0005515	protein binding	RAB1B	IPI	UniProtKB:Q5S007	Human	PMID:31046837
Molecular Function	GO:0005515	protein binding	RAB1B	IPI	UniProtKB:P47224	Human	PMID:32296183
Cellular Component	GO:0005793	endoplasmic reticulum-Golgi intermediate compartment	Rab1b	IDA		Mouse	PMID:21187406
Cellular Component	GO:0070062	extracellular exosome	RAB1B	HDA		Human	PMID:20458337
Cellular Component	GO:0005794	Golgi apparatus	RAB1B	IDA		Human	GO_REF:0000054
Cellular Component	GO:0005739	mitochondrion	Rab1b	HDA		Mouse	PMID:18614015
Cellular Component	GO:0034045	phagophore assembly site membrane	RAB1B	IDA		Human	PMID:20545908
Cellular Component	GO:0045202	synapse	Rab1b	EXP		Rat	PMID:24876496|RGD:10047219
Cellular Component	GO:0045202	synapse	Rab1b	IDA		Rat	PMID:24876496|RGD:10047219
Biological Process	GO:0006888	endoplasmic reticulum to Golgi vesicle-mediated transport	RAB1B	IGI	UniProtKB:P62820	Human	PMID:21680502
Biological Process	GO:0007030	Golgi organization	RAB1B	IMP		Human	PMID:26209634
Biological Process	GO:1903020	positive regulation of glycoprotein metabolic process	RAB1B	IGI	UniProtKB:P62820	Human	PMID:21680502
Biological Process	GO:2000785	regulation of autophagosome assembly	RAB1B	IMP		Human	PMID:20545908
Biological Process	GO:0019068	virion assembly	RAB1B	IGI	UniProtKB:P62820	Human	PMID:21680502

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern