Comparative GO Graph (mouse, human, rat, zebrafish)

Source

Alliance of Genome Resources

Compare experimental GO annotations for Human-Mouse-Rat-Zebrafish orthologs to Mouse Pygm

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

This class contains
- Human genes PYGM
- Mouse genes Pygm
- Rat genes Pygm
- Zfish genes pygma,pygmb
Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Pygm

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0016208	AMP binding	Pygm	IDA		Rat	PMID:14674711\|RGD:1599986
Molecular Function	GO:0030246	carbohydrate binding	Pygm	IDA		Rat	PMID:10572943\|RGD:1642811
Molecular Function	GO:0030246	carbohydrate binding	Pygm	IDA		Rat	PMID:14674711\|RGD:1599986
Molecular Function	GO:0030246	carbohydrate binding	Pygm	IDA		Rat	PMID:6449198\|RGD:1642743
Molecular Function	GO:0008184	glycogen phosphorylase activity	PYGM	IDA		Human	PMID:1150650
Molecular Function	GO:0008184	glycogen phosphorylase activity	PYGM	IMP		Human	PMID:8316268
Molecular Function	GO:0008184	glycogen phosphorylase activity	Pygm	IMP	MGI:MGI:5696972	Mouse	PMID:22730558
Molecular Function	GO:0008184	glycogen phosphorylase activity	Pygm	IDA		Mouse	PMID:15282316
Molecular Function	GO:0008184	glycogen phosphorylase activity	Pygm	IDA		Mouse	PMID:11785984
Molecular Function	GO:0008184	glycogen phosphorylase activity	Pygm	IMP		Mouse	PMID:17689562
Molecular Function	GO:0008184	glycogen phosphorylase activity	Pygm	IDA		Mouse	PMID:17689562
Molecular Function	GO:0008184	glycogen phosphorylase activity	Pygm	IDA		Rat	PMID:10572943\|RGD:1642811
Molecular Function	GO:0008184	glycogen phosphorylase activity	Pygm	IDA		Rat	PMID:11071367\|RGD:2304126
Molecular Function	GO:0008184	glycogen phosphorylase activity	Pygm	IDA		Rat	PMID:11692172\|RGD:1599897
Molecular Function	GO:0008184	glycogen phosphorylase activity	Pygm	IDA		Rat	PMID:14674711\|RGD:1599986
Molecular Function	GO:0008184	glycogen phosphorylase activity	Pygm	IDA		Rat	PMID:6244274\|RGD:2304186
Molecular Function	GO:0008184	glycogen phosphorylase activity	Pygm	IDA		Rat	PMID:6449198\|RGD:1642743
Molecular Function	GO:0008184	glycogen phosphorylase activity	Pygm	IDA		Rat	PMID:8550381\|RGD:2304119
Molecular Function	GO:0097159	organic cyclic compound binding	Pygm	IDA		Rat	PMID:17095214\|RGD:1642820
Molecular Function	GO:0005515	protein binding	PYGM	IPI	UniProtKB:O43741	Human	PMID:24722188
Molecular Function	GO:0005515	protein binding	PYGM	IPI	UniProtKB:O43741	Human	PMID:25416956
Molecular Function	GO:0005515	protein binding	PYGM	IPI	UniProtKB:Q96HA8	Human	PMID:25416956
Molecular Function	GO:0005515	protein binding	PYGM	IPI	UniProtKB:Q96HA8	Human	PMID:31515488
Molecular Function	GO:0005515	protein binding	PYGM	IPI	UniProtKB:O43741	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	PYGM	IPI	UniProtKB:P06737	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	PYGM	IPI	UniProtKB:P11216	Human	PMID:32296183
Molecular Function	GO:0030170	pyridoxal phosphate binding	Pygm	IDA		Rat	PMID:11692172\|RGD:1599897
Cellular Component	GO:0005737	cytoplasm	Pygm	IDA		Rat	PMID:8550381\|RGD:2304119
Cellular Component	GO:0070062	extracellular exosome	PYGM	HDA		Human	PMID:23533145
Cellular Component	GO:0016529	sarcoplasmic reticulum	Pygm	IDA		Rat	PMID:11692172\|RGD:1599897
Cellular Component	GO:0016529	sarcoplasmic reticulum	Pygm	IDA		Rat	PMID:12967914\|RGD:1599989
Biological Process	GO:0052576	carbohydrate storage	pygmb	IMP	ZFIN:ZDB-MRPHLNO-200615-4	Zfish	PMID:31747538
Biological Process	GO:0052576	carbohydrate storage	pygma	IMP	ZFIN:ZDB-MRPHLNO-200615-2	Zfish	PMID:31747538
Biological Process	GO:0005980	glycogen catabolic process	PYGM	IDA		Human	PMID:1150650
Biological Process	GO:0005980	glycogen catabolic process	PYGM	IMP		Human	PMID:8316268
Biological Process	GO:0005980	glycogen catabolic process	Pygm	IMP	MGI:MGI:5696972	Mouse	PMID:31511858
Biological Process	GO:0005980	glycogen catabolic process	Pygm	IDA		Mouse	PMID:15282316
Biological Process	GO:0005980	glycogen catabolic process	Pygm	IDA		Mouse	PMID:17689562
Biological Process	GO:0005980	glycogen catabolic process	Pygm	IMP		Mouse	PMID:17689562
Biological Process	GO:0005980	glycogen catabolic process	Pygm	IDA		Rat	PMID:10572943\|RGD:1642811
Biological Process	GO:0005980	glycogen catabolic process	Pygm	IDA		Rat	PMID:11071367\|RGD:2304126
Biological Process	GO:0005980	glycogen catabolic process	Pygm	IDA		Rat	PMID:11692172\|RGD:1599897
Biological Process	GO:0005980	glycogen catabolic process	Pygm	IDA		Rat	PMID:14674711\|RGD:1599986
Biological Process	GO:0005980	glycogen catabolic process	Pygm	IDA		Rat	PMID:6449198\|RGD:1642743
Biological Process	GO:0005977	glycogen metabolic process	Pygm	IDA		Rat	PMID:10572943\|RGD:1642811
Biological Process	GO:0005977	glycogen metabolic process	Pygm	IDA		Rat	PMID:6244274\|RGD:2304186
Biological Process	GO:0005977	glycogen metabolic process	Pygm	IDA		Rat	PMID:8550381\|RGD:2304119
Biological Process	GO:0006874	intracellular calcium ion homeostasis	Pygm	IDA		Rat	PMID:8810099\|RGD:1599992
Biological Process	GO:0051591	response to cAMP	Pygm	IDA		Rat	PMID:14579114\|RGD:1599988
Biological Process	GO:0001666	response to hypoxia	Pygm	IDA		Rat	PMID:14674711\|RGD:1599986
Biological Process	GO:0010033	response to organic substance	Pygm	IDA		Rat	PMID:10498852\|RGD:1599991
Biological Process	GO:0048741	skeletal muscle fiber development	pygma	IMP	ZFIN:ZDB-MRPHLNO-200615-2	Zfish	PMID:31747538
Biological Process	GO:0048741	skeletal muscle fiber development	pygmb	IMP	ZFIN:ZDB-MRPHLNO-200615-4	Zfish	PMID:31747538

Gene Ontology Evidence Code Abbreviations:

EXP Inferred from experiment

IDA Inferred from direct assay

IEP Inferred from expression pattern

IGI Inferred from genetic interaction

IMP Inferred from mutant phenotype

IPI Inferred from physical interaction

HTP Inferred from High Throughput Experiment

HDA Inferred from High Throughput Direct Assay

HMP Inferred from High Throughput Mutant Phenotype

HGI Inferred from High Throughput Genetic Interaction

HEP Inferred from High Throughput Expression Pattern

Contributing Projects: Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources Funding Information Warranty Disclaimer, Privacy Notice, Licensing, & Copyright Send questions and comments to User Support.	last database update 04/30/2024 MGI 6.23

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023. Complete table of the annotations represented in this image is provided below.

Molecular Function

Cellular Component

Biological Process

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.