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Pygm
Gene Detail
Symbol

Name
ID
Pygm
muscle glycogen phosphorylase
MGI:97830
Synonyms
PG
Feature Type
protein coding gene
Genetic Map
Chromosome 19
4.53 cM
Detailed Genetic Map ± 1 cM


Mapping data(7)
Sequence Map
Chr19:6384399-6398459 bp, + strand
From VEGA annotation of GRCm38

  14061 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:2145  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 western clawed frog; 1 zebrafish

Protein SuperFamily: glucan phosphorylase
Gene Tree: Pygm

Human
homologs
Human Homolog PYGM, phosphorylase, glycogen, muscle
NCBI Gene ID 5837
neXtProt AC  NX_P11217
Human Chr (Location)  11q12-q13.2; chr11:64746389-64760715 (-)  GRCh38
Disease Associations  (1) Diseases Associated with Human PYGM
Mutations,
alleles, and
phenotypes
All mutations/alleles(7) : Gene trapped(3) Targeted(4)
Incidental mutations (data from Mutagenetix , APF )
Interactions
Pygm interacts with 54 markers (Mir1b, Mir7b, Mir23a, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (28 annotations)
Process carbohydrate metabolic process, cellular calcium ion homeostasis, ...
Component cytoplasm, extracellular vesicular exosome, ...
Function AMP binding, carbohydrate binding, ...
This is a GO Consortium Reference Genome Project gene.
External Resources: FuncBase
Expression
Literature Summary: (3 records)
Data Summary: Results (182)    Tissues (49)    Images (25)    Tissue x Stage Matrix (view)
Assay TypeResults
RNA in situ 182
cDNA source data(49)
External Resources: Allen Institute   GEO   Expression Atlas
Molecular
reagents
All nucleic(52) cDNA(51) Primer pair(1)
Microarray probesets(4)
Other database
links
VEGA Gene ModelOTTMUSG00000018613 (Evidence)
Ensembl Gene ModelENSMUSG00000032648 (Evidence)
Entrez Gene19309 (Evidence)
UniGene27806
DFCITC1574672
DoTSDT.534027, DT.94369767
NIA Mouse Gene IndexU038688
EC2.4.1.1
Consensus CDS ProjectCCDS29504.1
International Mouse Knockout Project StatusPygm
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000018613 VEGA Gene Model | MGI Sequence Detail 14061 C57BL/6J ±  kb
transcript OTTMUST00000044793 VEGA | MGI Sequence Detail 2874 Not Applicable 
polypeptide OTTMUSP00000020157 VEGA | MGI Sequence Detail 842 Not Applicable 

For the selected sequences
All sequences(32) RefSeq(2) UniProt(5)
Polymorphisms
RFLP(4) : SNPs within 2kb(77 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR011833 Glycogen/starch/alpha-glucan phosphorylase
InterPro IPR000811 Glycosyl transferase, family 35
Protein Ontology PR:000013522 glycogen phosphorylase, muscle form
References
(Earliest) J:10246 Glaser T, et al., Localization of the muscle, liver, and brain glycogen phosphorylase genes on linkage maps of mouse chromosomes 19, 12, and 2, respectively. Genomics. 1989 Oct;5(3):510-21
(Latest) J:193822 Lumayag S, et al., Inactivation of the microRNA-183/96/182 cluster results in syndromic retinal degeneration. Proc Natl Acad Sci U S A. 2013 Feb 5;110(6):E507-16
All references(48)
Other
accession IDs
MGD-MRK-13703, MGI:2147475

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
12/16/2014
MGI 5.20
The Jackson Laboratory