Pygm
Gene Detail

Symbol

Name
ID

Pygm
muscle glycogen phosphorylase
MGI:97830

Synonyms

PG

Feature Type

protein coding gene

Genetic Map

Chromosome 19
4.53 cM
Detailed Genetic Map ± 1 cM


Mapping data(7)

Sequence Map

Chr19:6384399-6398459 bp, + strand From VEGA annotation of GRCm38   14061 bp   ±  kb flank VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer

Mouse Genome Browser

Vertebrate
homology

HomoloGene:2145  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 western clawed frog; 1 zebrafish

Protein SuperFamily: glucan phosphorylase
Gene Tree: Pygm

Human
homologs

Human Homolog		PYGM, phosphorylase, glycogen, muscle
NCBI Gene ID		5837
neXtProt AC		NX_P11217
Human Chr (Location)		11q12-q13.2; chr11:64746389-64760715 (-)  GRCh38
Disease Associations		(1) Diseases Associated with Human PYGM

Mutations,
alleles, and
phenotypes

All mutations/alleles(7) : Gene trapped(3) Targeted(4)
Incidental mutations (data from Mutagenetix , APF )

Interactions

Pygm interacts with 54 markers (Mir1b, Mir7b, Mir23a, ...)

View All

Gene Ontology
(GO)
classifications

All GO classifications: (28 annotations)

Process	carbohydrate metabolic process, cellular calcium ion homeostasis, ...
Component	cytoplasm, extracellular vesicular exosome, ...
Function	AMP binding, carbohydrate binding, ...

This is a GO Consortium Reference Genome Project gene.
External Resources: FuncBase

Expression

Literature Summary: (3 records)

Data Summary: Results (182)    Tissues (49)    Images (25)    Tissue x Stage Matrix (view)

Assay Type	Results
RNA in situ	182

cDNA source data(49)
External Resources: Allen Institute   GEO   Expression Atlas

Molecular
reagents

All nucleic(52) cDNA(51) Primer pair(1)
Microarray probesets(4)

Other database
links

VEGA Gene Model	OTTMUSG00000018613 (Evidence)
Ensembl Gene Model	ENSMUSG00000032648 (Evidence)
Entrez Gene	19309 (Evidence)
UniGene	27806
DFCI	TC1574672
DoTS	DT.534027, DT.94369767
NIA Mouse Gene Index	U038688
EC	2.4.1.1
Consensus CDS Project	CCDS29504.1
International Mouse Knockout Project Status	Pygm

Sequences

Length	Strain/Species
genomic	OTTMUSG00000018613	VEGA Gene Model | MGI Sequence Detail	14061	C57BL/6J
transcript	OTTMUST00000044793	VEGA | MGI Sequence Detail	2874	Not Applicable
polypeptide	OTTMUSP00000020157	VEGA | MGI Sequence Detail	842	Not Applicable

All sequences(32) RefSeq(2) UniProt(5)

Polymorphisms

RFLP(4) : SNPs within 2kb(77 from dbSNP Build 137)

Protein-related
information

Resource	ID	Description
InterPro	IPR011833	Glycogen/starch/alpha-glucan phosphorylase
InterPro	IPR000811	Glycosyl transferase, family 35
Protein Ontology	PR:000013522	glycogen phosphorylase, muscle form

References

(Earliest) J:10246 Glaser T, et al., Localization of the muscle, liver, and brain glycogen phosphorylase genes on linkage maps of mouse chromosomes 19, 12, and 2, respectively. Genomics. 1989 Oct;5(3):510-21
(Latest) J:193822 Lumayag S, et al., Inactivation of the microRNA-183/96/182 cluster results in syndromic retinal degeneration. Proc Natl Acad Sci U S A. 2013 Feb 5;110(6):E507-16
All references(48)

Other
accession IDs

MGD-MRK-13703, MGI:2147475