Comparative GO Graph (mouse, human, rat, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes PTP4A1
  • Mouse genes Ptp4a1
  • Rat genes Ptp4a1
  • Zfish genes ptp4a1
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Ptp4a1

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0005515	protein binding	PTP4A1	IPI	UniProtKB:Q9NRU3	Human	PMID:27880917
Molecular Function	GO:0005515	protein binding	PTP4A1	IPI	UniProtKB:Q9NRU3	Human	PMID:28330616
Molecular Function	GO:0005515	protein binding	PTP4A1	IPI	UniProtKB:Q9NRU3	Human	PMID:32296183
Molecular Function	GO:0004725	protein tyrosine phosphatase activity	Ptp4a1	IDA		Rat	PMID:8196618|RGD:61722
Cellular Component	GO:0005737	cytoplasm	PTP4A1	IDA		Human	PMID:10940933
Cellular Component	GO:0009898	cytoplasmic side of plasma membrane	PTP4A1	IDA		Human	PMID:10940933
Cellular Component	GO:0005634	nucleus	Ptp4a1	IDA		Rat	PMID:8196618|RGD:61722
Biological Process	GO:0030335	positive regulation of cell migration	Ptp4a1	IDA		Mouse	MGI:MGI:3690175|PMID:12782572

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern