Comparative GO Graph (mouse, human, rat, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes PPIE
  • Mouse genes Ppie
  • Rat genes Ppie
  • Zfish genes ppie
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Ppie

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0016018	cyclosporin A binding	PPIE	IDA		Human	PMID:20676357
Molecular Function	GO:0003729	mRNA binding	PPIE	IDA		Human	PMID:18258190
Molecular Function	GO:0003755	peptidyl-prolyl cis-trans isomerase activity	PPIE	IDA		Human	PMID:18258190
Molecular Function	GO:0003755	peptidyl-prolyl cis-trans isomerase activity	PPIE	IDA		Human	PMID:20676357
Molecular Function	GO:0008143	poly(A) binding	PPIE	IDA		Human	PMID:18258190
Molecular Function	GO:0005515	protein binding	PPIE	IPI	UniProtKB:Q03164	Human	PMID:11313484
Molecular Function	GO:0005515	protein binding	PPIE	IPI	UniProtKB:Q9HCS7	Human	PMID:16189514
Molecular Function	GO:0005515	protein binding	PPIE	IPI	UniProtKB:Q03164	Human	PMID:20541251
Molecular Function	GO:0005515	protein binding	PPIE	IPI	UniProtKB:Q9HCS7	Human	PMID:22365833
Molecular Function	GO:0005515	protein binding	PPIE	IPI	UniProtKB:O60306	Human	PMID:24981860
Molecular Function	GO:0005515	protein binding	PPIE	IPI	UniProtKB:Q9HCS7	Human	PMID:24981860
Molecular Function	GO:0005515	protein binding	PPIE	IPI	UniProtKB:Q9HCS7	Human	PMID:25416956
Molecular Function	GO:0005515	protein binding	PPIE	IPI	UniProtKB:O60306	Human	PMID:25599396
Molecular Function	GO:0005515	protein binding	PPIE	IPI	UniProtKB:Q9HCS7	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	PPIE	IPI	UniProtKB:P06396	Human	PMID:32814053
Molecular Function	GO:0005515	protein binding	PPIE	IPI	UniProtKB:P22607	Human	PMID:32814053
Molecular Function	GO:0003723	RNA binding	PPIE	HDA		Human	PMID:22658674
Cellular Component	GO:0071013	catalytic step 2 spliceosome	PPIE	IDA		Human	PMID:11991638
Cellular Component	GO:0005829	cytosol	PPIE	IDA		Human	GO_REF:0000052
Cellular Component	GO:0016607	nuclear speck	PPIE	IDA		Human	GO_REF:0000052
Cellular Component	GO:0005634	nucleus	PPIE	IDA		Human	PMID:11313484
Cellular Component	GO:0005634	nucleus	PPIE	IDA		Human	PMID:28076346
Cellular Component	GO:0071007	U2-type catalytic step 2 spliceosome	PPIE	IDA		Human	PMID:28076346
Biological Process	GO:0000398	mRNA splicing, via spliceosome	PPIE	IDA		Human	PMID:28076346
Biological Process	GO:0045070	positive regulation of viral genome replication	PPIE	IMP		Human	PMID:19932913
Biological Process	GO:0000413	protein peptidyl-prolyl isomerization	PPIE	IDA		Human	PMID:20676357
Biological Process	GO:0006355	regulation of DNA-templated transcription	PPIE	IMP		Human	PMID:11313484

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern