Comparative GO Graph (mouse, human, rat, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes PLOD2
  • Mouse genes Plod2
  • Rat genes Plod2
  • Zfish genes plod2
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Plod2

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0008475	procollagen-lysine 5-dioxygenase activity	PLOD2	IDA		Human	PMID:10934207
Molecular Function	GO:0008475	procollagen-lysine 5-dioxygenase activity	plod2	IMP	ZFIN:ZDB-GENO-170307-7	Zfish	PMID:27541483
Cellular Component	GO:0070062	extracellular exosome	PLOD2	HDA		Human	PMID:19199708
Biological Process	GO:0032870	cellular response to hormone stimulus	Plod2	IEP		Rat	PMID:15817667|RGD:2314536
Biological Process	GO:0032964	collagen biosynthetic process	plod2	IMP	ZFIN:ZDB-GENO-170307-7	Zfish	PMID:30082390
Biological Process	GO:0030199	collagen fibril organization	plod2	IMP	ZFIN:ZDB-GENO-170307-7	Zfish	PMID:27541483
Biological Process	GO:0046947	hydroxylysine biosynthetic process	PLOD2	IDA		Human	PMID:10934207
Biological Process	GO:0030903	notochord development	plod2	IMP	ZFIN:ZDB-GENO-170307-7	Zfish	PMID:27541483
Biological Process	GO:0017185	peptidyl-lysine hydroxylation	PLOD2	IDA		Human	PMID:10934207
Biological Process	GO:0001666	response to hypoxia	PLOD2	IEP		Human	PMID:15174142
Biological Process	GO:0001666	response to hypoxia	Plod2	IEP		Rat	PMID:14622280|RGD:1303932
Biological Process	GO:0048741	skeletal muscle fiber development	plod2	IMP	ZFIN:ZDB-GENO-170307-7	Zfish	PMID:27541483
Biological Process	GO:0001501	skeletal system development	plod2	IMP	ZFIN:ZDB-GENO-170307-7	Zfish	PMID:27541483
Biological Process	GO:0001501	skeletal system development	plod2	IMP	ZFIN:ZDB-GENO-170307-7	Zfish	PMID:28884682

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern