Comparative GO Graph (mouse, human, rat, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes PIR
  • Mouse genes Pir
  • Rat genes Pir
  • Zfish genes pir
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Pir

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0046872	metal ion binding	PIR	IDA		Human	PMID:20711196
Molecular Function	GO:0005515	protein binding	PIR	IPI	UniProtKB:P20749	Human	PMID:10362352
Molecular Function	GO:0008127	quercetin 2,3-dioxygenase activity	PIR	IDA		Human	PMID:15951572
Molecular Function	GO:0003712	transcription coregulator activity	PIR	IMP		Human	PMID:23716661
Cellular Component	GO:0005737	cytoplasm	PIR	IDA		Human	PMID:20089166
Cellular Component	GO:0005829	cytosol	PIR	IDA		Human	GO_REF:0000052
Cellular Component	GO:0016604	nuclear body	PIR	IDA		Human	GO_REF:0000052
Cellular Component	GO:0005654	nucleoplasm	PIR	IDA		Human	GO_REF:0000052
Cellular Component	GO:0005634	nucleus	PIR	IDA		Human	PMID:9079676
Biological Process	GO:0030224	monocyte differentiation	PIR	IMP		Human	PMID:20010624
Biological Process	GO:0030099	myeloid cell differentiation	Pir	IMP		Mouse	PMID:20010624

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern