Comparative GO Graph (mouse, human, rat, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes PGD
  • Mouse genes Pgd
  • Rat genes Pgd
  • Zfish genes pgd
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Pgd

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0030246	carbohydrate binding	Pgd	IDA		Rat	PMID:6813321|RGD:1641956
Molecular Function	GO:0031406	carboxylic acid binding	Pgd	IDA		Rat	PMID:17447164|RGD:1624966
Molecular Function	GO:0031406	carboxylic acid binding	Pgd	IDA		Rat	PMID:2843500|RGD:1599574
Molecular Function	GO:0050661	NADP binding	Pgd	IDA		Rat	PMID:17447164|RGD:1624966
Molecular Function	GO:0050661	NADP binding	Pgd	IDA		Rat	PMID:6813321|RGD:1641956
Molecular Function	GO:0004616	phosphogluconate dehydrogenase (decarboxylating) activity	Pgd	IDA		Mouse	PMID:5360673
Molecular Function	GO:0004616	phosphogluconate dehydrogenase (decarboxylating) activity	Pgd	IDA		Mouse	PMID:12466018
Molecular Function	GO:0004616	phosphogluconate dehydrogenase (decarboxylating) activity	Pgd	IDA		Mouse	PMID:7496990
Molecular Function	GO:0004616	phosphogluconate dehydrogenase (decarboxylating) activity	Pgd	IDA		Mouse	PMID:1235912
Molecular Function	GO:0004616	phosphogluconate dehydrogenase (decarboxylating) activity	Pgd	IDA		Mouse	PMID:15155459
Molecular Function	GO:0004616	phosphogluconate dehydrogenase (decarboxylating) activity	Pgd	IDA		Mouse	PMID:7323947
Molecular Function	GO:0004616	phosphogluconate dehydrogenase (decarboxylating) activity	Pgd	IDA		Mouse	PMID:8491670
Molecular Function	GO:0004616	phosphogluconate dehydrogenase (decarboxylating) activity	Pgd	IDA		Mouse	PMID:204065
Molecular Function	GO:0004616	phosphogluconate dehydrogenase (decarboxylating) activity	Pgd	IDA		Rat	PMID:17447164|RGD:1624966
Molecular Function	GO:0004616	phosphogluconate dehydrogenase (decarboxylating) activity	Pgd	IDA		Rat	PMID:21930213|RGD:10047267
Molecular Function	GO:0004616	phosphogluconate dehydrogenase (decarboxylating) activity	Pgd	IDA		Rat	PMID:2843500|RGD:1599574
Molecular Function	GO:0004616	phosphogluconate dehydrogenase (decarboxylating) activity	Pgd	IDA		Rat	PMID:6813321|RGD:1641956
Cellular Component	GO:0005829	cytosol	Pgd	IDA		Mouse	PMID:5360673
Cellular Component	GO:0070062	extracellular exosome	PGD	HDA		Human	PMID:19056867
Cellular Component	GO:0070062	extracellular exosome	PGD	HDA		Human	PMID:20458337
Cellular Component	GO:0070062	extracellular exosome	PGD	HDA		Human	PMID:23533145
Cellular Component	GO:0043231	intracellular membrane-bounded organelle	Pgd	IDA		Rat	PMID:2843500|RGD:1599574
Cellular Component	GO:0043231	intracellular membrane-bounded organelle	Pgd	IDA		Rat	PMID:6813321|RGD:1641956
Cellular Component	GO:0005634	nucleus	PGD	HDA		Human	PMID:21630459
Biological Process	GO:0005975	carbohydrate metabolic process	Pgd	IDA		Rat	PMID:6813321|RGD:1641956
Biological Process	GO:0019521	D-gluconate metabolic process	Pgd	IDA		Rat	PMID:17447164|RGD:1624966
Biological Process	GO:0006739	NADP metabolic process	Pgd	IDA		Rat	PMID:6813321|RGD:1641956
Biological Process	GO:0019322	pentose biosynthetic process	Pgd	IDA		Mouse	PMID:8491670
Biological Process	GO:0006098	pentose-phosphate shunt	Pgd	IDA		Rat	PMID:2843500|RGD:1599574
Biological Process	GO:0009051	pentose-phosphate shunt, oxidative branch	PGD	IDA		Human	PMID:3858849
Biological Process	GO:0009051	pentose-phosphate shunt, oxidative branch	Pgd	IDA		Mouse	PMID:5360673
Biological Process	GO:0009051	pentose-phosphate shunt, oxidative branch	Pgd	IDA		Mouse	PMID:7496990
Biological Process	GO:0009051	pentose-phosphate shunt, oxidative branch	Pgd	IDA		Mouse	PMID:12466018
Biological Process	GO:0009051	pentose-phosphate shunt, oxidative branch	Pgd	IMP		Rat	PMID:9794092|RGD:1641793

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern