Comparative GO Graph (mouse, human, rat, zebrafish)

Source

Alliance of Genome Resources

Compare experimental GO annotations for Human-Mouse-Rat-Zebrafish orthologs to Mouse Per1

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

This class contains
- Human genes PER1
- Mouse genes Per1
- Rat genes Per1
- Zfish genes per1a,per1b
Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Per1

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0031490	chromatin DNA binding	Per1	IDA		Mouse	MGI:MGI:5568183\|PMID:24610784
Molecular Function	GO:0140297	DNA-binding transcription factor binding	Per1	IPI	UniProtKB:O08785\|UniProtKB:Q9WTL8	Mouse	MGI:MGI:5543956\|PMID:24154698
Molecular Function	GO:0070888	E-box binding	PER1	IDA		Human	PMID:18411297
Molecular Function	GO:0019900	kinase binding	PER1	IPI	UniProtKB:P49674	Human	PMID:15917222
Molecular Function	GO:0019900	kinase binding	PER1	IPI	UniProtKB:P78368	Human	PMID:15917222
Molecular Function	GO:0019900	kinase binding	Per1	IPI	UniProtKB:Q9JMK2	Mouse	MGI:MGI:3027197\|PMID:14701732
Molecular Function	GO:0005515	protein binding	PER1	IPI	UniProtKB:Q9R194	Human	PMID:23503662
Molecular Function	GO:0005515	protein binding	PER1	IPI	UniProtKB:P41235	Human	PMID:30530698
Molecular Function	GO:0005515	protein binding	PER1	IPI	UniProtKB:O14901	Human	PMID:32814053
Molecular Function	GO:0005515	protein binding	PER1	IPI	UniProtKB:O60333-2	Human	PMID:32814053
Molecular Function	GO:0005515	protein binding	PER1	IPI	UniProtKB:O60356	Human	PMID:32814053
Molecular Function	GO:0005515	protein binding	PER1	IPI	UniProtKB:O75400-2	Human	PMID:32814053
Molecular Function	GO:0005515	protein binding	PER1	IPI	UniProtKB:O75460-2	Human	PMID:32814053
Molecular Function	GO:0005515	protein binding	PER1	IPI	UniProtKB:O76024	Human	PMID:32814053
Molecular Function	GO:0005515	protein binding	PER1	IPI	UniProtKB:P01112	Human	PMID:32814053
Molecular Function	GO:0005515	protein binding	PER1	IPI	UniProtKB:P04792	Human	PMID:32814053
Molecular Function	GO:0005515	protein binding	PER1	IPI	UniProtKB:P06396	Human	PMID:32814053
Molecular Function	GO:0005515	protein binding	PER1	IPI	UniProtKB:P07237	Human	PMID:32814053
Molecular Function	GO:0005515	protein binding	PER1	IPI	UniProtKB:P14136	Human	PMID:32814053
Molecular Function	GO:0005515	protein binding	PER1	IPI	UniProtKB:P22607	Human	PMID:32814053
Molecular Function	GO:0005515	protein binding	PER1	IPI	UniProtKB:P28799	Human	PMID:32814053
Molecular Function	GO:0005515	protein binding	PER1	IPI	UniProtKB:P29692-2	Human	PMID:32814053
Molecular Function	GO:0005515	protein binding	PER1	IPI	UniProtKB:P41091	Human	PMID:32814053
Molecular Function	GO:0005515	protein binding	PER1	IPI	UniProtKB:P46379-2	Human	PMID:32814053
Molecular Function	GO:0005515	protein binding	PER1	IPI	UniProtKB:P49591	Human	PMID:32814053
Molecular Function	GO:0005515	protein binding	PER1	IPI	UniProtKB:P54652	Human	PMID:32814053
Molecular Function	GO:0005515	protein binding	PER1	IPI	UniProtKB:P55212	Human	PMID:32814053
Molecular Function	GO:0005515	protein binding	PER1	IPI	UniProtKB:P60201-2	Human	PMID:32814053
Molecular Function	GO:0005515	protein binding	PER1	IPI	UniProtKB:P60891	Human	PMID:32814053
Molecular Function	GO:0005515	protein binding	PER1	IPI	UniProtKB:P62826	Human	PMID:32814053
Molecular Function	GO:0005515	protein binding	PER1	IPI	UniProtKB:Q0VDC6	Human	PMID:32814053
Molecular Function	GO:0005515	protein binding	PER1	IPI	UniProtKB:Q14957	Human	PMID:32814053
Molecular Function	GO:0005515	protein binding	PER1	IPI	UniProtKB:Q8WUW1	Human	PMID:32814053
Molecular Function	GO:0005515	protein binding	PER1	IPI	UniProtKB:Q8WXH2	Human	PMID:32814053
Molecular Function	GO:0005515	protein binding	PER1	IPI	UniProtKB:Q92870-2	Human	PMID:32814053
Molecular Function	GO:0005515	protein binding	PER1	IPI	UniProtKB:Q99832	Human	PMID:32814053
Molecular Function	GO:0005515	protein binding	PER1	IPI	UniProtKB:Q9P1I4	Human	PMID:32814053
Molecular Function	GO:0005515	protein binding	PER1	IPI	UniProtKB:Q9UMX0	Human	PMID:32814053
Molecular Function	GO:0005515	protein binding	Per1	IPI	UniProtKB:Q9R1X4	Mouse	MGI:MGI:1316573\|PMID:9856465
Molecular Function	GO:0005515	protein binding	Per1	IPI	UniProtKB:Q9JMK2	Mouse	MGI:MGI:4946906\|PMID:21179498
Molecular Function	GO:0005515	protein binding	Per1	IPI	UniProtKB:O70361\|UniProtKB:P97784\|UniProtKB:Q9R194	Mouse	MGI:MGI:3027197\|PMID:14701732
Molecular Function	GO:0005515	protein binding	Per1	IPI	UniProtKB:Q9R194	Mouse	MGI:MGI:5543956\|PMID:24154698
Molecular Function	GO:0005515	protein binding	Per1	IPI	UniProtKB:Q8VIJ6\|UniProtKB:Q99K48	Mouse	MGI:MGI:5444785\|PMID:22966205
Molecular Function	GO:0005515	protein binding	Per1	IPI	UniProtKB:O54943	Mouse	MGI:MGI:4455093\|PMID:20211142
Molecular Function	GO:0005515	protein binding	Per1	IPI	UniProtKB:O54943	Mouse	MGI:MGI:5014424\|PMID:21680841
Molecular Function	GO:0005515	protein binding	Per1	IPI	UniProtKB:Q5U349	Mouse	MGI:MGI:5607210\|PMID:23213472
Molecular Function	GO:0005515	protein binding	Per1	IPI	UniProtKB:P97784\|UniProtKB:Q9JMK2\|UniProtKB:Q9R194	Mouse	MGI:MGI:5489023\|PMID:23555304
Molecular Function	GO:0005515	protein binding	Per1	IPI	UniProtKB:O54943\|UniProtKB:P97784\|UniProtKB:Q9R194	Mouse	MGI:MGI:5568139\|PMID:24737000
Molecular Function	GO:0005515	protein binding	Per1	IPI	UniProtKB:Q9R1X4	Mouse	MGI:MGI:1344065\|PMID:10231394
Molecular Function	GO:0005515	protein binding	Per1	IPI	UniProtKB:O08785\|UniProtKB:Q9WTL8	Mouse	MGI:MGI:3694308\|PMID:16717091
Molecular Function	GO:0005515	protein binding	Per1	IPI	UniProtKB:Q9DC28\|UniProtKB:Q9JMK2	Mouse	MGI:MGI:3849793\|PMID:19414593
Molecular Function	GO:0005515	protein binding	Per1	IPI	UniProtKB:O54943	Mouse	MGI:MGI:5508702\|PMID:23079727
Molecular Function	GO:0005515	protein binding	Per1	IPI	PR:O70361	Mouse	PMID:9856466
Molecular Function	GO:0005515	protein binding	Per1	IPI	RGD:621343	Rat	PMID:11597585\|RGD:633668
Molecular Function	GO:0005515	protein binding	Per1	IPI	UniProtKB:Q498M4	Rat	PMID:15860628\|RGD:1579815
Molecular Function	GO:0005515	protein binding	Per1	IPI	UniProtKB:Q4V8C4	Rat	PMID:15860628\|RGD:1579815
Molecular Function	GO:0005515	protein binding	Per1	IPI	UniProtKB:Q5FVM4	Rat	PMID:15860628\|RGD:1579815
Molecular Function	GO:0000978	RNA polymerase II cis-regulatory region sequence-specific DNA binding	PER1	IDA		Human	PMID:18411297
Molecular Function	GO:0000976	transcription cis-regulatory region binding	Per1	IDA		Mouse	MGI:MGI:5569417\|PMID:24413057
Molecular Function	GO:0031625	ubiquitin protein ligase binding	PER1	IPI	UniProtKB:Q9UKB1	Human	PMID:15917222
Molecular Function	GO:0031625	ubiquitin protein ligase binding	PER1	IPI	UniProtKB:Q9Y297	Human	PMID:15917222
Cellular Component	GO:0005737	cytoplasm	PER1	IDA		Human	PMID:24005054
Cellular Component	GO:0005829	cytosol	PER1	IDA		Human	GO_REF:0000052
Cellular Component	GO:0005654	nucleoplasm	PER1	IDA		Human	GO_REF:0000052
Cellular Component	GO:0005634	nucleus	Per1	IDA		Mouse	MGI:MGI:5543956\|PMID:24154698
Cellular Component	GO:0005634	nucleus	Per1	IDA		Mouse	PMID:11591712
Cellular Component	GO:0005634	nucleus	Per1	IDA		Rat	PMID:22356123\|RGD:8661632
Biological Process	GO:0006338	chromatin remodeling	Per1	IMP		Mouse	MGI:MGI:5014424\|PMID:21680841
Biological Process	GO:0032922	circadian regulation of gene expression	PER1	IDA		Human	PMID:18411297
Biological Process	GO:0032922	circadian regulation of gene expression	PER1	IDA		Human	PMID:24005054
Biological Process	GO:0032922	circadian regulation of gene expression	Per1	IDA		Mouse	MGI:MGI:4429726\|PMID:20159955
Biological Process	GO:0032922	circadian regulation of gene expression	Per1	IMP		Mouse	MGI:MGI:3578039\|PMID:15888647
Biological Process	GO:0097167	circadian regulation of translation	Per1	IMP		Mouse	MGI:MGI:1935010\|PMID:11395012
Biological Process	GO:0007623	circadian rhythm	PER1	IEP		Human	PMID:14645221
Biological Process	GO:0007623	circadian rhythm	Per1	IEP		Mouse	MGI:MGI:4820700\|PMID:20106950
Biological Process	GO:0007623	circadian rhythm	Per1	IEP		Mouse	MGI:MGI:5559671\|PMID:14645221
Biological Process	GO:0007623	circadian rhythm	Per1	IEP		Mouse	MGI:MGI:5464222\|PMID:23133559
Biological Process	GO:0007623	circadian rhythm	Per1	IEP		Mouse	MGI:MGI:4420353\|PMID:19740747
Biological Process	GO:0007623	circadian rhythm	Per1	IEP		Mouse	MGI:MGI:5503234\|PMID:23785138
Biological Process	GO:0007623	circadian rhythm	Per1	IEP		Mouse	MGI:MGI:5494765\|PMID:23443664
Biological Process	GO:0007623	circadian rhythm	Per1	IMP		Rat	PMID:11122332\|RGD:1299576
Biological Process	GO:0007623	circadian rhythm	Per1	IEP		Rat	PMID:12176169\|RGD:631234
Biological Process	GO:0007623	circadian rhythm	Per1	IEP		Rat	PMID:15094047\|RGD:8554359
Biological Process	GO:0071542	dopaminergic neuron differentiation	per1b	IMP	ZFIN:ZDB-GENO-150417-5	Zfish	PMID:25673850
Biological Process	GO:0043153	entrainment of circadian clock by photoperiod	Per1	IMP		Mouse	MGI:MGI:3578039\|PMID:15888647
Biological Process	GO:0045892	negative regulation of DNA-templated transcription	Per1	IDA		Mouse	MGI:MGI:3794495\|PMID:18316400
Biological Process	GO:0045892	negative regulation of DNA-templated transcription	Per1	IDA		Mouse	MGI:MGI:2388855\|PMID:12397359
Biological Process	GO:0045892	negative regulation of DNA-templated transcription	Per1	IDA		Mouse	MGI:MGI:1316573\|PMID:9856465
Biological Process	GO:2000323	negative regulation of glucocorticoid receptor signaling pathway	Per1	IMP		Mouse	MGI:MGI:5567887\|PMID:24378737
Biological Process	GO:0043124	negative regulation of I-kappaB kinase/NF-kappaB signaling	Per1	IMP		Rat	PMID:24447840\|RGD:8655527
Biological Process	GO:0046329	negative regulation of JNK cascade	Per1	IMP		Rat	PMID:24447840\|RGD:8655527
Biological Process	GO:0000122	negative regulation of transcription by RNA polymerase II	Per1	IDA		Mouse	MGI:MGI:5297789\|PMID:15147242
Biological Process	GO:0000122	negative regulation of transcription by RNA polymerase II	Per1	IMP		Mouse	MGI:MGI:5568183\|PMID:24610784
Biological Process	GO:0000122	negative regulation of transcription by RNA polymerase II	Per1	IDA		Mouse	MGI:MGI:2388855\|PMID:12397359
Biological Process	GO:0000122	negative regulation of transcription by RNA polymerase II	Per1	IDA		Mouse	PMID:9989497
Biological Process	GO:0009648	photoperiodism	per1a	IEP		Zfish	PMID:11517315
Biological Process	GO:1904340	positive regulation of dopaminergic neuron differentiation	per1b	IMP	ZFIN:ZDB-GENO-180607-5	Zfish	PMID:29157002
Biological Process	GO:0045944	positive regulation of transcription by RNA polymerase II	Per1	IMP		Mouse	MGI:MGI:5568183\|PMID:24610784
Biological Process	GO:0010608	post-transcriptional regulation of gene expression	Per1	IMP		Mouse	MGI:MGI:3578039\|PMID:15888647
Biological Process	GO:0042752	regulation of circadian rhythm	Per1	IMP		Mouse	MGI:MGI:1935010\|PMID:11395012
Biological Process	GO:0042752	regulation of circadian rhythm	per1b	IMP	ZFIN:ZDB-GENO-150417-5	Zfish	PMID:25673850
Biological Process	GO:1900015	regulation of cytokine production involved in inflammatory response	Per1	IMP		Rat	PMID:24447840\|RGD:8655527
Biological Process	GO:0042634	regulation of hair cycle	PER1	IMP		Human	PMID:24005054
Biological Process	GO:1900744	regulation of p38MAPK cascade	Per1	IMP		Rat	PMID:24447840\|RGD:8655527
Biological Process	GO:0002028	regulation of sodium ion transport	Per1	IMP		Mouse	MGI:MGI:5568183\|PMID:24610784
Biological Process	GO:0051591	response to cAMP	Per1	IDA		Mouse	MGI:MGI:5494765\|PMID:23443664
Biological Process	GO:0042542	response to hydrogen peroxide	per1a	IEP		Zfish	PMID:17898172
Biological Process	GO:0009416	response to light stimulus	per1b	IDA		Zfish	PMID:18800057
Biological Process	GO:0009416	response to light stimulus	per1b	IDA		Zfish	PMID:16176122
Biological Process	GO:0009416	response to light stimulus	per1b	IEP		Zfish	PMID:15024110
Biological Process	GO:0009266	response to temperature stimulus	per1b	IDA		Zfish	PMID:16176122
Biological Process	GO:0009266	response to temperature stimulus	per1b	IDA		Zfish	PMID:18800057
Biological Process	GO:0060041	retina development in camera-type eye	per1b	IMP	ZFIN:ZDB-GENO-180607-5	Zfish	PMID:29157002
Biological Process	GO:0007601	visual perception	per1b	IMP	ZFIN:ZDB-GENO-180607-5	Zfish	PMID:29157002

Gene Ontology Evidence Code Abbreviations:

EXP Inferred from experiment

IDA Inferred from direct assay

IEP Inferred from expression pattern

IGI Inferred from genetic interaction

IMP Inferred from mutant phenotype

IPI Inferred from physical interaction

HTP Inferred from High Throughput Experiment

HDA Inferred from High Throughput Direct Assay

HMP Inferred from High Throughput Mutant Phenotype

HGI Inferred from High Throughput Genetic Interaction

HEP Inferred from High Throughput Expression Pattern

Contributing Projects: Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources Funding Information Warranty Disclaimer, Privacy Notice, Licensing, & Copyright Send questions and comments to User Support.	last database update 04/16/2024 MGI 6.23

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023. Complete table of the annotations represented in this image is provided below.

Molecular Function

Cellular Component

Biological Process

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.