Comparative GO Graph (mouse, human, rat, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes PDLIM5
  • Mouse genes Pdlim5
  • Rat genes Pdlim5
  • Zfish genes pdlim5a,pdlim5b
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Pdlim5

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0003779	actin binding	Pdlim5	IDA		Rat	PMID:10833443|RGD:8554583
Molecular Function	GO:0042805	actinin binding	Pdlim5	IDA		Rat	PMID:10833443|RGD:8554583
Molecular Function	GO:0098641	cadherin binding involved in cell-cell adhesion	PDLIM5	HDA		Human	PMID:25468996
Molecular Function	GO:0005515	protein binding	PDLIM5	IPI	UniProtKB:Q02363	Human	PMID:16549780
Molecular Function	GO:0005515	protein binding	PDLIM5	IPI	UniProtKB:P38432	Human	PMID:25416956
Molecular Function	GO:0005515	protein binding	PDLIM5	IPI	UniProtKB:P60409	Human	PMID:25416956
Molecular Function	GO:0005515	protein binding	PDLIM5	IPI	UniProtKB:Q15942	Human	PMID:25416956
Molecular Function	GO:0005515	protein binding	PDLIM5	IPI	UniProtKB:Q6A162	Human	PMID:25416956
Molecular Function	GO:0005515	protein binding	PDLIM5	IPI	UniProtKB:Q96JN2-2	Human	PMID:25416956
Molecular Function	GO:0005515	protein binding	PDLIM5	IPI	UniProtKB:P38432	Human	PMID:31515488
Molecular Function	GO:0005515	protein binding	PDLIM5	IPI	UniProtKB:P14136	Human	PMID:32814053
Molecular Function	GO:0005515	protein binding	PDLIM5	IPI	UniProtKB:P42858	Human	PMID:32814053
Molecular Function	GO:0005515	protein binding	PDLIM5	IPI	UniProtKB:P54253	Human	PMID:32814053
Molecular Function	GO:0005515	protein binding	PDLIM5	IPI	UniProtKB:Q8WXH2	Human	PMID:32814053
Molecular Function	GO:0005515	protein binding	Pdlim5	IPI	UniProtKB:Q99LJ3	Mouse	PMID:10833443
Molecular Function	GO:0005515	protein binding	Pdlim5	IPI	UniProtKB:O35412	Rat	PMID:19900557|RGD:8554803
Molecular Function	GO:0005515	protein binding	Pdlim5	IPI	RGD:3396	Rat	PMID:8940095|RGD:632670
Molecular Function	GO:0005515	protein binding	Pdlim5	IPI	UniProtKB:P68403-1	Rat	PMID:8940095|RGD:632670
Molecular Function	GO:0005080	protein kinase C binding	Pdlim5	IDA		Rat	PMID:8940095|RGD:632670
Cellular Component	GO:0015629	actin cytoskeleton	PDLIM5	IDA		Human	GO_REF:0000054
Cellular Component	GO:0005912	adherens junction	PDLIM5	HDA		Human	PMID:25468996
Cellular Component	GO:0005829	cytosol	Pdlim5	IDA		Rat	PMID:19900557|RGD:8554803
Cellular Component	GO:0005829	cytosol	Pdlim5	IDA		Rat	PMID:8940095|RGD:632670
Cellular Component	GO:0016020	membrane	Pdlim5	IDA		Rat	PMID:8940095|RGD:632670
Cellular Component	GO:0014069	postsynaptic density	Pdlim5	IDA		Rat	PMID:19900557|RGD:8554803
Cellular Component	GO:0030018	Z disc	Pdlim5	IDA		Mouse	PMID:10833443
Biological Process	GO:0061049	cell growth involved in cardiac muscle cell development	Pdlim5	IGI	RNAcentral:URS000015930E_10116	Rat	PMID:24743145|RGD:10054083
Biological Process	GO:0061001	regulation of dendritic spine morphogenesis	Pdlim5	IDA		Rat	PMID:19900557|RGD:8554803
Biological Process	GO:0051963	regulation of synapse assembly	Pdlim5	IDA		Rat	PMID:19900557|RGD:8554803

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern