Comparative GO Graph (mouse, human, rat, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes PDGFD
  • Mouse genes Pdgfd
  • Rat genes Pdgfd
  • Zfish genes pdgfd
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Pdgfd

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Cellular Component	GO:0005615	extracellular space	Pdgfd	HDA		Mouse	MGI:MGI:5640941|PMID:24006456
Cellular Component	GO:0005615	extracellular space	Pdgfd	IDA		Rat	PMID:17397961|RGD:9854631
Biological Process	GO:0071230	cellular response to amino acid stimulus	Pdgfd	IDA		Mouse	PMID:20548288
Biological Process	GO:0070301	cellular response to hydrogen peroxide	Pdgfd	IEP		Rat	PMID:16189269|RGD:9854628
Biological Process	GO:0036120	cellular response to platelet-derived growth factor stimulus	Pdgfd	IEP		Rat	PMID:16039137|RGD:1581755
Biological Process	GO:0071560	cellular response to transforming growth factor beta stimulus	Pdgfd	IMP		Rat	PMID:23585135|RGD:9854632
Biological Process	GO:0048146	positive regulation of fibroblast proliferation	Pdgfd	IDA		Rat	PMID:21866094|RGD:9854633
Biological Process	GO:0072126	positive regulation of glomerular mesangial cell proliferation	Pdgfd	IMP		Rat	PMID:12937299|RGD:9854637
Biological Process	GO:2000439	positive regulation of monocyte extravasation	Pdgfd	IMP		Rat	PMID:12937299|RGD:9854637
Biological Process	GO:0071673	positive regulation of smooth muscle cell chemotaxis	Pdgfd	IMP		Rat	PMID:15752751|RGD:9854640
Biological Process	GO:0048661	positive regulation of smooth muscle cell proliferation	Pdgfd	IDA		Rat	PMID:15752751|RGD:9854640
Biological Process	GO:0050730	regulation of peptidyl-tyrosine phosphorylation	Pdgfd	IDA		Mouse	PMID:11940581

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern