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Pdgfd
Gene Detail
 Symbol
Name
ID
Pdgfd
platelet-derived growth factor, D polypeptide
MGI:1919035
Synonyms 1110003I09Rik
Feature Type protein coding gene
Genetic Map
Chromosome 9
2.46 cM, cytoband A1
Detailed Genetic Map ± 1 cM


Mapping data(2)
Sequence Map
Chr9:6168612-6377519 bp, + strand
From NCBI annotation of GRCm38

  208908 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:11875  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 chicken; 1 zebrafish

Protein SuperFamily: platelet- derived growth factor, PDGF C/PDGF D types
Gene Tree: Pdgfd

Human
homologs
Human Homolog PDGFD, platelet derived growth factor D
NCBI Gene ID 80310
neXtProt AC  NX_Q9GZP0
Human Synonyms  IEGF, SCDGFB, SCDGF-B
Human Chr (Location)  11q22.3; chr11:103907186-104164299 (-)  GRCh38
Alleles
and
phenotypes
All alleles(3) : Targeted(3)
Incidental mutations (data from Mutagenetix , APF )
Gene Ontology
(GO)
classifications
All GO classifications: (13 annotations)
Process cellular process, cellular response to amino acid stimulus, ...
Component extracellular region, extracellular space, ...
Function growth factor activity, platelet-derived growth factor receptor binding
External Resources: FuncBase
Expression
Literature Summary: (4 records)
Data Summary: Results (24)    Tissues (15)    Images (2)
Theiler Stages: 23
Assay TypeResults
RNA in situ 24
cDNA source data(6)
External Resources: Allen Institute   GEO   ArrayExpress
Molecular
reagents
All nucleic(6) cDNA(6)
Microarray probesets(4)
Other database
links
Ensembl Gene ModelENSMUSG00000032006 (Evidence)
Entrez Gene71785 (Evidence)
DFCITC1584881, TC1593939
DoTSDT.480976, DT.55212556, DT.94146256
NIA Mouse Gene IndexU010016
Consensus CDS ProjectCCDS22801.1
International Mouse Knockout Project StatusPdgfd
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic 71785 NCBI Gene Model | MGI Sequence Detail 208908 C57BL/6J ±  kb
transcript NM_027924 RefSeq | MGI Sequence Detail 1795 C57BL/6 
polypeptide Q925I7 UniProt | EBI | MGI Sequence Detail 370 Not Applicable 

For the selected sequences
All sequences(27) RefSeq(8) UniProt(1)
Polymorphisms SNPs within 2kb(1188 from dbSNP Build 137)    SNPs within 2kb including multiple locations(1190)
Protein-related
information
ResourceIDDescription
InterPro IPR000859 CUB domain
InterPro IPR027123 Platelet-derived growth factor D
InterPro IPR000072 Platelet-derived growth factor (PDGF)
Protein Ontology PR:000000704 platelet-derived growth factor D
Graphical View of Protein Domain Structure
References (Earliest) J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
(Latest) J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42
All references(38)

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
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last database update
07/15/2014
MGI 5.18
The Jackson Laboratory