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Pdgfd
Gene Detail
Symbol

Name
ID
Pdgfd
platelet-derived growth factor, D polypeptide
MGI:1919035
Synonyms
1110003I09Rik
Feature Type
protein coding gene
Genetic Map
Chromosome 9
2.46 cM, cytoband A1
Detailed Genetic Map ± 1 cM


Mapping data(2)
Sequence Map
Chr9:6168612-6378843 bp, + strand
From Ensembl annotation of GRCm38

  210232 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:11875  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 chicken; 1 western clawed frog; 1 zebrafish

HCOP human homology predictions: PDGFD
Protein SuperFamily: platelet- derived growth factor, PDGF C/PDGF D types
Gene Tree: Pdgfd

Human
homologs
PDGFD, platelet derived growth factor D
Orthology source: HomoloGene

IDs:
NCBI Gene ID: 80310
neXtProt AC: NX_Q9GZP0

Human Synonyms: IEGF, MSTP036, SCDGFB, SCDGF-B

Human Chr (Location): 11q22.3; chr11:103907186-104164299 (-)  GRCh38.p2

Mutations,
alleles, and
phenotypes
All mutations/alleles(3) : Targeted(3)
Incidental mutations (data from Mutagenetix , APF )
Interactions
Pdgfd interacts with 300 markers (Mir1a-1, Mir1a-2, Mir1b, ...)
Gene Ontology
(GO)
classifications
Expression
Literature Summary: (5 records)
Data Summary: Results (24)    Tissues (15)    Images (2)    Tissue x Stage Matrix (view)
Assay TypeResults
RNA in situ 24
cDNA source data(6)
Other mouse links: Allen Institute   GEO   Expression Atlas
Other vertebrate links: GEISHA PDGFD ; Xenbase LOC100492060    NEW 
Molecular
reagents
All nucleic(6) cDNA(6)
Microarray probesets(4)
Other database
links
Ensembl Gene Model ENSMUSG00000032006 (Evidence)
Entrez Gene 71785 (Evidence)
DFCI TC1593939, TC1584881
DoTS DT.55212556, DT.480976, DT.94146256
NIA Mouse Gene Index U010016
Consensus CDS Project CCDS22801.1
International Mouse Phenotyping Consortium Status Pdgfd
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000032006 Ensembl Gene Model | MGI Sequence Detail 210232 C57BL/6J ±  kb
transcript ENSMUST00000168039 Ensembl | MGI Sequence Detail 1795 Not Applicable 
polypeptide ENSMUSP00000128388 Ensembl | MGI Sequence Detail 370 Not Applicable 

For the selected sequences
All sequences(33) RefSeq(14) UniProt(1)
Polymorphisms
SNPs within 2kb(1208 from dbSNP Build 137)    SNPs within 2kb including multiple locations(1210)
Protein-related
information
ResourceIDDescription
InterPro IPR000859 CUB domain
InterPro IPR027123 Platelet-derived growth factor D
InterPro IPR000072 Platelet-derived growth factor (PDGF)
Protein Ontology PR:000000704 platelet-derived growth factor D
References
(Earliest) J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
(Latest) J:217538 Lui JH, et al., Radial glia require PDGFD-PDGFRbeta signalling in human but not mouse neocortex. Nature. 2014 Nov 13;515(7526):264-8
All references(39)

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
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last database update
06/30/2015
MGI 5.22
The Jackson Laboratory