Comparative GO Graph (mouse, human, rat, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes PCDHA4
  • Mouse genes Pcdha4
  • Rat genes Pcdha4
  • Zfish genes pcdh1a3,pcdh1a4,pcdh2aa15,pcdh2ab1,pcdh2ab10,pcdh2ab11,pcdh2ab12,pcdh2ab2,pcdh2ab3,pcdh2ab5
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Pcdha4

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0005509	calcium ion binding	Pcdha4	IDA		Mouse	MGI:MGI:5810245|PMID:27161523
Molecular Function	GO:0042802	identical protein binding	Pcdha4	IDA		Mouse	MGI:MGI:5810245|PMID:27161523
Molecular Function	GO:0005515	protein binding	PCDHA4	IPI	UniProtKB:O43765	Human	PMID:25416956
Molecular Function	GO:0005515	protein binding	Pcdha4	IPI	UniProtKB:Q99LI8	Mouse	MGI:MGI:4837272|PMID:20876099
Molecular Function	GO:0005515	protein binding	Pcdha4	IPI	PR:Q91XX7	Mouse	PMID:15347688
Molecular Function	GO:0005515	protein binding	Pcdha4	IPI	PR:Q91XZ0	Mouse	PMID:15347688
Molecular Function	GO:0005515	protein binding	Pcdha4	IPI	PR:Q91XY5	Mouse	PMID:15347688
Molecular Function	GO:0005515	protein binding	Pcdha4	IPI	PR:Q91XX8	Mouse	PMID:15347688
Molecular Function	GO:0005515	protein binding	Pcdha4	IPI	PR:Q91XX6	Mouse	PMID:15347688
Molecular Function	GO:0005515	protein binding	Pcdha4	IPI	PR:P39688	Mouse	PMID:9655502
Molecular Function	GO:0005515	protein binding	Pcdha4	IPI	PR:Q91XY7	Mouse	PMID:15347688
Cellular Component	GO:0005783	endoplasmic reticulum	Pcdha4	IDA		Mouse	PMID:11401448
Cellular Component	GO:0016020	membrane	Pcdha4	IDA		Mouse	PMID:15347688
Cellular Component	GO:0045202	synapse	Pcdha4	IDA		Mouse	PMID:9655502

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern