Comparative GO Graph (mouse, human, rat, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes PCARE
  • Mouse genes Pcare
  • Rat genes Pcare
  • Zfish genes pcare1,pcare2
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Pcare

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Cellular Component	GO:0005929	cilium	PCARE	IDA		Human	PMID:20398886
Cellular Component	GO:0120199	cone photoreceptor outer segment	Pcare	IDA		Mouse	PMID:25616964
Cellular Component	GO:0001917	photoreceptor inner segment	Pcare	IDA		Mouse	PMID:25616964
Biological Process	GO:0021549	cerebellum development	pcare1	IMP	ZFIN:ZDB-MRPHLNO-101104-3	Zfish	PMID:27029556
Biological Process	GO:0021549	cerebellum development	pcare1	IGI	ZFIN:ZDB-MRPHLNO-101104-3,ZFIN:ZDB-MRPHLNO-151207-5	Zfish	PMID:27029556
Biological Process	GO:0060026	convergent extension	pcare1	IMP	ZFIN:ZDB-MRPHLNO-101104-3	Zfish	PMID:27029556
Biological Process	GO:0060026	convergent extension	pcare1	IGI	ZFIN:ZDB-MRPHLNO-101104-3,ZFIN:ZDB-MRPHLNO-151207-5	Zfish	PMID:27029556
Biological Process	GO:0050908	detection of light stimulus involved in visual perception	pcare1	IMP	ZFIN:ZDB-MRPHLNO-101104-3	Zfish	PMID:20398886
Biological Process	GO:0042461	photoreceptor cell development	pcare1	IMP	ZFIN:ZDB-GENO-190523-1	Zfish	PMID:29946172
Biological Process	GO:0035845	photoreceptor cell outer segment organization	Pcare	IMP	MGI:MGI:5751702	Mouse	PMID:25616964
Biological Process	GO:1903546	protein localization to photoreceptor outer segment	Pcare	IMP	MGI:MGI:5751702	Mouse	PMID:25616964
Biological Process	GO:0060041	retina development in camera-type eye	pcare1	IGI	ZFIN:ZDB-MRPHLNO-101104-3,ZFIN:ZDB-MRPHLNO-151207-5	Zfish	PMID:27029556
Biological Process	GO:0060041	retina development in camera-type eye	pcare1	IMP	ZFIN:ZDB-MRPHLNO-101104-3	Zfish	PMID:27029556

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern