Comparative GO Graph (mouse, human, rat, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes PATJ
  • Mouse genes Patj
  • Rat genes Patj
  • Zfish genes patj
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Patj

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0005515	protein binding	PATJ	IPI	UniProtKB:P82279	Human	PMID:11927608
Molecular Function	GO:0005515	protein binding	PATJ	IPI	UniProtKB:Q8N3R9	Human	PMID:11927608
Molecular Function	GO:0005515	protein binding	PATJ	IPI	UniProtKB:Q8IX03	Human	PMID:18596123
Molecular Function	GO:0005515	protein binding	PATJ	IPI	UniProtKB:P35240	Human	PMID:21481793
Molecular Function	GO:0005515	protein binding	PATJ	IPI	UniProtKB:Q8N3R9	Human	PMID:21481793
Molecular Function	GO:0005515	protein binding	PATJ	IPI	UniProtKB:P46937	Human	PMID:24255178
Molecular Function	GO:0005515	protein binding	PATJ	IPI	UniProtKB:P46937	Human	PMID:24366813
Molecular Function	GO:0005515	protein binding	PATJ	IPI	UniProtKB:Q8N3R9	Human	PMID:24366813
Molecular Function	GO:0005515	protein binding	PATJ	IPI	UniProtKB:P46937	Human	PMID:35044719
Molecular Function	GO:0005515	protein binding	Patj	IPI	UniProtKB:Q60857	Mouse	MGI:MGI:3710710|PMID:17452640
Molecular Function	GO:0005515	protein binding	Patj	IPI	UniProtKB:Q9JLB2	Mouse	MGI:MGI:4454735|PMID:20399730
Molecular Function	GO:0005515	protein binding	Patj	IPI	UniProtKB:O35240	Mouse	MGI:MGI:5508286|PMID:11872753
Molecular Function	GO:0005515	protein binding	Patj	IPI	PR:Q9D4H4	Mouse	PMID:17397395
Molecular Function	GO:0005515	protein binding	Patj	IPI	PR:Q8VHG2	Mouse	PMID:17397395
Molecular Function	GO:0005515	protein binding	Patj	IPI	PR:O88932	Mouse	PMID:9647694
Molecular Function	GO:0005515	protein binding	Patj	IPI	PR:Q8K371	Mouse	PMID:17397395
Molecular Function	GO:0005515	protein binding	Patj	IPI	PR:Q9JM63	Mouse	PMID:9647694
Molecular Function	GO:0005515	protein binding	Patj	IPI	PR:P35436	Mouse	PMID:9647694
Molecular Function	GO:0005515	protein binding	Patj	IPI	PR:Q8VHG2	Mouse	PMID:18824598
Cellular Component	GO:0045177	apical part of cell	Patj	IDA		Mouse	PMID:25636444
Cellular Component	GO:0045177	apical part of cell	Patj	IDA		Mouse	PMID:14758363
Cellular Component	GO:0005923	bicellular tight junction	PATJ	IDA		Human	PMID:22006950
Cellular Component	GO:0030054	cell junction	PATJ	IDA		Human	GO_REF:0000052
Cellular Component	GO:0034451	centriolar satellite	PATJ	IDA		Human	GO_REF:0000052
Cellular Component	GO:0005829	cytosol	PATJ	IDA		Human	GO_REF:0000052
Cellular Component	GO:0070062	extracellular exosome	PATJ	HDA		Human	PMID:19056867
Cellular Component	GO:0070062	extracellular exosome	PATJ	HDA		Human	PMID:23533145
Cellular Component	GO:0048471	perinuclear region of cytoplasm	PATJ	IDA		Human	PMID:18596123
Cellular Component	GO:0032991	protein-containing complex	Patj	IDA		Rat	PMID:18621709|RGD:5131983
Cellular Component	GO:0035003	subapical complex	Patj	IDA		Mouse	PMID:16885194

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern