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Patj Gene Detail
Summary
  • Symbol
    Patj
  • Name
    PATJ, crumbs cell polarity complex component
  • Synonyms
    Cipp, Inadl
  • Feature Type
    protein coding gene
  • IDs
    MGI:1277960
    NCBI Gene: 12695
  • Gene Overview
    MyGene.info: PATJ
  • Alliance
  • Transcription Start Sites
    20 TSS
Location &
Maps
more
  • Sequence Map
    Chr4:98395785-98719603 bp, + strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 4, 45.60 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    2243 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1277960
protein coding gene Chr4:98395622-98719603 (.)
129S1/SvImJ MGP_129S1SvImJ_G0028472
protein coding gene Chr4:98557061-98891361 (+)
A/J MGP_AJ_G0028435
protein coding gene Chr4:95127674-95456190 (+)
AKR/J MGP_AKRJ_G0028382
protein coding gene Chr4:97433415-97772770 (+)
BALB/cJ MGP_BALBcJ_G0028453
protein coding gene Chr4:95375144-95701001 (+)
C3H/HeJ MGP_C3HHeJ_G0028166
protein coding gene Chr4:98230031-98568195 (+)
C57BL/6NJ MGP_C57BL6NJ_G0028892
protein coding gene Chr4:102331280-102665621 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0026184
protein coding gene Chr4:90519868-90834532 (+)
CAST/EiJ MGP_CASTEiJ_G0027606
protein coding gene Chr4:96025944-96353305 (+)
CBA/J MGP_CBAJ_G0028135
protein coding gene Chr4:105409624-105765718 (+)
DBA/2J MGP_DBA2J_G0028285
protein coding gene Chr4:94885962-95206599 (+)
FVB/NJ MGP_FVBNJ_G0028252
protein coding gene Chr4:93738203-94053182 (+)
LP/J MGP_LPJ_G0028385
protein coding gene Chr4:98873257-99208528 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0028280
protein coding gene Chr4:111192641-111533203 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0028930
protein coding gene Chr4:97683488-98019306 (+)
PWK/PhJ MGP_PWKPhJ_G0027331
protein coding gene Chr4:93028055-93347848 (+)
SPRET/EiJ MGP_SPRETEiJ_G0027152
protein coding gene Chr4:95139424-95459413 (+)
WSB/EiJ MGP_WSBEiJ_G0027684
protein coding gene Chr4:97809379-98144121 (+)



Homology
more
  • Human Ortholog
    PATJ, PATJ, crumbs cell polarity complex component
  • Vertebrate Orthologs
    10
  • Human Ortholog
    PATJ, PATJ, crumbs cell polarity complex component
    Orthology source: HomoloGene, HGNC
  • Synonyms
    Cipp, hINADL, INADL, InaD-like
  • Links
    NCBI Gene ID: 10207
    UniProt: Q8NI35

  • Chr Location
    1p31.3; chr1:61742477-62163920 (+)  GRCh38.p7

  • HomoloGene
    Vertebrate Homology Class 72199
    1 human;1 mouse;1 rat;1 chimpanzee;1 cattle;1 dog;1 chicken;1 zebrafish;1 frog, western clawed;1 macaque, rhesus
  • HCOP
    human homology predictions: PATJ
  • Gene Tree
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    10 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000061859 Ensembl Gene Model | MGI Sequence Detail 323819 C57BL/6J ±  kb
transcript ENSMUST00000041284 Ensembl | MGI Sequence Detail 7340 Not Applicable  
polypeptide ENSMUSP00000049176 Ensembl | MGI Sequence Detail 1834 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 89
    cDNA 88
    Primer pair 1

    Microarray probesets 6
References
more
  • Summaries
    All 52
    Developmental Gene Expression 12
    Gene Ontology 10
    Phenotypes 10
  • Earliest
    J:48437 Kurschner C, et al., CIPP, a novel multivalent PDZ domain protein, selectively interacts with Kir4.0 family members, NMDA receptor subunits, neurexins, and neuroligins. Mol Cell Neurosci. 1998 Jun;11(3):161-72
  • Latest
    J:260419 Jiang X, et al., Asymmetric distribution of CRUMBS polarity complex proteins from compacted 8-cell to blastocyst stage during mouse preimplantation development. Gene Expr Patterns. 2018 Jan;27:93-98

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
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last database update
11/06/2018
MGI 6.13
The Jackson Laboratory