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Patj Gene Detail
Summary
  • Symbol
    Patj
  • Name
    PATJ, crumbs cell polarity complex component
  • Synonyms
    Cipp, Inadl
  • Feature Type
    protein coding gene
  • IDs
    MGI:1277960
    NCBI Gene: 12695
  • Gene Overview
    MyGene.info: PATJ
Location & Maps
more
  • Sequence Map
    Chr4:98395785-98719603 bp, + strand
  • From VEGA annotation of GRCm38

    Mouse Genome Browser

  • Download
    Sequence
      323819 bp   ±  kb flank

  • Genome Browsers
  • Genetic Map
    Chromosome 4, 45.60 cM
  • Mapping Data
    2 experiments
Homology
more
  • Human Ortholog
    PATJ, PATJ, crumbs cell polarity complex component
  • Vertebrate Orthologs
    10
  • Human Ortholog
    PATJ, PATJ, crumbs cell polarity complex component
    Orthology source: HomoloGene, HGNC
  • Synonyms
    Cipp, hINADL, INADL, InaD-like
  • Links
    NCBI Gene ID: 10207
    neXtProt AC: NX_Q8NI35

  • Chr Location
    1p31.3; chr1:61742477-62163920 (+)  GRCh38.p2

  • HomoloGene
    Vertebrate Homology Class 72199
    1 human;1 mouse;1 rat;1 chimpanzee;1 rhesus macaque;1 cattle;1 dog;1 chicken;1 zebrafish;1 frog, western clawed
  • HCOP
    human homology predictions: PATJ
  • Gene Tree
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    10 phenotype references
  • All Mutations and Alleles
    10
  • Chemically induced (other)
    2
  • Endonuclease-mediated
    1
  • Gene trapped
    5
  • Radiation induced
    1
  • Targeted
    1
  • Genomic Mutations
    4 involving Patj
  • Incidental Mutations
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
receptor
receptor binding
RNA binding
transcription
transferase
transporter
Biological Process

nucleic acid-templated transcription
carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
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Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000008476 VEGA Gene Model | MGI Sequence Detail 323819 C57BL/6J ±  kb
transcript OTTMUST00000019382 VEGA | MGI Sequence Detail 7340 Not Applicable  
polypeptide OTTMUSP00000008895 VEGA | MGI Sequence Detail 1834 Not Applicable  
For the selected sequence
Polymorphisms
less
  • SNPs within 2kb
    2243 from dbSNP Build 142
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 86
    cDNA 86

    Microarray probesets 6
References
more
  • Summaries
    All 41
    Developmental Gene Expression 10
    Gene Ontology 9
    Phenotypes 10
  • Earliest
    J:48437 Kurschner C, et al., CIPP, a novel multivalent PDZ domain protein, selectively interacts with Kir4.0 family members, NMDA receptor subunits, neurexins, and neuroligins. Mol Cell Neurosci. 1998 Jun;11(3):161-72
  • Latest
    J:220858 Kim JY, et al., Common and distinctive localization patterns of Crumbs polarity complex proteins in the mammalian eye. Gene Expr Patterns. 2015 Jan;17(1):31-7

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
09/20/2016
MGI 6.05
The Jackson Laboratory