Comparative GO Graph (mouse, human, rat, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes OPN1LW,OPN1MW,OPN1MW2,OPN1MW3
  • Mouse genes Opn1mw
  • Rat genes Opn1mw
  • Zfish genes opn1lw1,opn1lw2
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Opn1mw

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0042802	identical protein binding	OPN1MW	IDA		Human	PMID:28402104
Molecular Function	GO:0009881	photoreceptor activity	OPN1LW	IMP		Human	PMID:8185948
Molecular Function	GO:0009881	photoreceptor activity	OPN1MW	IMP		Human	PMID:8185948
Molecular Function	GO:0005515	protein binding	OPN1LW	IPI	UniProtKB:A5PKU2	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	OPN1LW	IPI	UniProtKB:Q8IXM6	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	Opn1mw	IPI	PR:Q61025	Mouse	PMID:21307337
Cellular Component	GO:0001750	photoreceptor outer segment	Opn1mw	IDA		Mouse	PMID:19332056
Cellular Component	GO:0001750	photoreceptor outer segment	Opn1mw	IDA		Mouse	PMID:10725384
Cellular Component	GO:0001750	photoreceptor outer segment	Opn1mw	IDA		Mouse	PMID:23351594
Cellular Component	GO:0001750	photoreceptor outer segment	Opn1mw	IDA		Mouse	PMID:23386608
Cellular Component	GO:0001750	photoreceptor outer segment	Opn1mw	IDA		Mouse	PMID:12651948
Cellular Component	GO:0001750	photoreceptor outer segment	Opn1mw	IDA		Rat	PMID:20209167|RGD:6893562
Cellular Component	GO:0005886	plasma membrane	OPN1MW	IDA		Human	PMID:20579627
Biological Process	GO:0009648	photoperiodism	opn1lw1	IDA		Zfish	PMID:18687681
Biological Process	GO:0032467	positive regulation of cytokinesis	OPN1LW	IMP		Human	PMID:22888021
Biological Process	GO:0032467	positive regulation of cytokinesis	OPN1MW	IMP		Human	PMID:22888021
Biological Process	GO:0009416	response to light stimulus	opn1lw1	IDA		Zfish	PMID:18687681

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern