Comparative GO Graph (mouse, human, rat, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes NEUROD6
  • Mouse genes Neurod6
  • Rat genes Neurod6
  • Zfish genes neurod6a,neurod6b
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Neurod6

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0001228	DNA-binding transcription activator activity, RNA polymerase II-specific	Neurod6	IDA		Mouse	MGI:MGI:5572891|PMID:12562512
Molecular Function	GO:0000978	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Neurod6	IDA		Mouse	MGI:MGI:5572891|PMID:12562512
Biological Process	GO:0021542	dentate gyrus development	Neurod6	IGI	MGI:MGI:1339708	Mouse	PMID:10804213
Biological Process	GO:0050769	positive regulation of neurogenesis	neurod6a	IMP		Zfish	PMID:12044886
Biological Process	GO:0045944	positive regulation of transcription by RNA polymerase II	Neurod6	IDA		Mouse	MGI:MGI:5572891|PMID:12562512

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern