Comparative GO Graph (mouse, human, rat, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes NEGR1
  • Mouse genes Negr1
  • Rat genes Negr1
  • Zfish genes negr1
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Negr1

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0042802	identical protein binding	negr1	IDA		Zfish	PMID:18296487
Molecular Function	GO:0005515	protein binding	NEGR1	IPI	UniProtKB:Q13449	Human	PMID:21982860
Molecular Function	GO:0005515	protein binding	NEGR1	IPI	UniProtKB:Q9P121	Human	PMID:21982860
Molecular Function	GO:0005515	protein binding	NEGR1	IPI	UniProtKB:P61916	Human	PMID:27940359
Molecular Function	GO:0005515	protein binding	negr1	IPI	UniProtKB:Q642G9	Zfish	PMID:20802085|ZFIN:ZDB-PUB-100910-6
Molecular Function	GO:0005515	protein binding	negr1	IPI	UniProtKB:A4JYF7	Zfish	PMID:18296487
Molecular Function	GO:0005515	protein binding	negr1	IPI	UniProtKB:A4JYK9	Zfish	PMID:18296487
Cellular Component	GO:0030425	dendrite	Negr1	IDA		Rat	PMID:10075727|RGD:1299429
Cellular Component	GO:0043025	neuronal cell body	Negr1	IDA		Rat	PMID:10075727|RGD:1299429
Cellular Component	GO:0005886	plasma membrane	Negr1	IDA		Mouse	PMID:22844493
Biological Process	GO:0007420	brain development	Negr1	IEP		Rat	PMID:11153709|RGD:40886280
Biological Process	GO:0098609	cell-cell adhesion	Negr1	IDA		Mouse	PMID:22844493
Biological Process	GO:0007631	feeding behavior	Negr1	IMP	MGI:MGI:5447397	Mouse	PMID:22844493
Biological Process	GO:0007626	locomotory behavior	Negr1	IMP	MGI:MGI:5447397	Mouse	PMID:22844493
Biological Process	GO:0031175	neuron projection development	Negr1	IDA		Mouse	PMID:22844493
Biological Process	GO:0010976	positive regulation of neuron projection development	Negr1	IDA		Mouse	PMID:22844493
Biological Process	GO:0051963	regulation of synapse assembly	Negr1	IMP		Rat	PMID:18602091|RGD:40886282

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern