Comparative GO Graph (mouse, human, rat, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes NCAN
  • Mouse genes Ncan
  • Rat genes Ncan
  • Zfish genes ncanb
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Ncan

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Cellular Component	GO:0098982	GABA-ergic synapse	Ncan	IDA		Mouse	PMID:29670169
Cellular Component	GO:0098978	glutamatergic synapse	Ncan	IMP		Mouse	PMID:11486035
Cellular Component	GO:0098978	glutamatergic synapse	Ncan	IDA		Mouse	PMID:11486035
Cellular Component	GO:0098978	glutamatergic synapse	Ncan	IDA		Mouse	PMID:30356641
Cellular Component	GO:0098978	glutamatergic synapse	Ncan	EXP		Mouse	PMID:30356641
Cellular Component	GO:0072534	perineuronal net	Ncan	IDA		Rat	PMID:16644727|RGD:9589827
Cellular Component	GO:0098966	perisynaptic extracellular matrix	Ncan	IDA		Mouse	PMID:29670169
Cellular Component	GO:0098966	perisynaptic extracellular matrix	Ncan	IDA		Mouse	PMID:30356641
Cellular Component	GO:0045202	synapse	Ncan	EXP		Rat	PMID:16507876|RGD:13702274
Cellular Component	GO:0045202	synapse	Ncan	IDA		Rat	PMID:16507876|RGD:13702274
Biological Process	GO:0050804	modulation of chemical synaptic transmission	Ncan	IMP		Mouse	PMID:11486035
Biological Process	GO:0050804	modulation of chemical synaptic transmission	Ncan	IDA		Mouse	PMID:11486035
Biological Process	GO:0099175	regulation of postsynapse organization	Ncan	IDA		Mouse	PMID:30356641
Biological Process	GO:0099175	regulation of postsynapse organization	Ncan	EXP		Mouse	PMID:30356641
Biological Process	GO:0051823	regulation of synapse structural plasticity	Ncan	IMP	MGI:MGI:2182149	Mouse	PMID:11486035

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern