Comparative GO Graph (mouse, human, rat, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes MB
  • Mouse genes Mb
  • Rat genes Mb
  • Zfish genes mb
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Mb

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0019825	oxygen binding	Mb	IDA		Rat	PMID:16430787|RGD:1582402
Molecular Function	GO:0005515	protein binding	Mb	IPI	UniProtKB:O70244	Rat	PMID:12724130|RGD:1299150
Molecular Function	GO:0005515	protein binding	Mb	IPI	UniProtKB:P98158	Rat	PMID:12724130|RGD:1299150
Cellular Component	GO:0070062	extracellular exosome	MB	HDA		Human	PMID:23533145
Biological Process	GO:0050873	brown fat cell differentiation	Mb	IDA		Mouse	PMID:18492766
Biological Process	GO:0048565	digestive tract development	mb	IMP	ZFIN:ZDB-MRPHLNO-100504-1	Zfish	PMID:19378255
Biological Process	GO:0043353	enucleate erythrocyte differentiation	Mb	IMP	MGI:MGI:2159004	Mouse	PMID:14656764
Biological Process	GO:0007507	heart development	Mb	IMP	MGI:MGI:2159349	Mouse	PMID:11304494
Biological Process	GO:0015671	oxygen transport	Mb	IDA		Rat	PMID:17038435|RGD:1582398
Biological Process	GO:0014823	response to activity	mb	IDA		Zfish	PMID:16966387
Biological Process	GO:0009725	response to hormone	Mb	IDA		Rat	PMID:15489001|RGD:1582397
Biological Process	GO:0042542	response to hydrogen peroxide	Mb	IDA		Rat	PMID:12126758|RGD:1582443
Biological Process	GO:0001666	response to hypoxia	Mb	IMP	MGI:MGI:2159004	Mouse	PMID:14656764
Biological Process	GO:0001666	response to hypoxia	mb	IDA		Zfish	PMID:16709914
Biological Process	GO:0031444	slow-twitch skeletal muscle fiber contraction	Mb	IEP		Rat	PMID:15981298|RGD:1582404
Biological Process	GO:0001570	vasculogenesis	mb	IMP	ZFIN:ZDB-MRPHLNO-100504-1	Zfish	PMID:19378255

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern