Comparative GO Graph (mouse, human, rat, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes LNPK
  • Mouse genes Lnpk
  • Rat genes Lnpk
  • Zfish genes lnpa,lnpk
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Lnpk

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0042802	identical protein binding	LNPK	IDA		Human	PMID:27619977
Cellular Component	GO:0005783	endoplasmic reticulum	LNPK	IDA		Human	GO_REF:0000052
Cellular Component	GO:0005789	endoplasmic reticulum membrane	LNPK	IDA		Human	PMID:24223779
Cellular Component	GO:0098826	endoplasmic reticulum tubular network membrane	LNPK	IDA		Human	PMID:24223779
Cellular Component	GO:0098826	endoplasmic reticulum tubular network membrane	LNPK	IDA		Human	PMID:25404289
Cellular Component	GO:0098826	endoplasmic reticulum tubular network membrane	LNPK	IDA		Human	PMID:25548161
Cellular Component	GO:0098826	endoplasmic reticulum tubular network membrane	LNPK	IDA		Human	PMID:27619977
Cellular Component	GO:0005654	nucleoplasm	LNPK	IDA		Human	GO_REF:0000052
Biological Process	GO:0007596	blood coagulation	Lnpk	IMP	MGI:MGI:1857660	Mouse	PMID:8835524
Biological Process	GO:0042733	embryonic digit morphogenesis	Lnpk	IGI	MGI:MGI:96205	Mouse	PMID:9342042
Biological Process	GO:0035115	embryonic forelimb morphogenesis	Lnpk	IMP		Mouse	PMID:22916278
Biological Process	GO:0035115	embryonic forelimb morphogenesis	Lnpk	IMP	MGI:MGI:1857660	Mouse	PMID:9342042
Biological Process	GO:0007029	endoplasmic reticulum organization	LNPK	IMP		Human	PMID:30032983
Biological Process	GO:0071788	endoplasmic reticulum tubular network maintenance	LNPK	IMP		Human	PMID:25548161
Biological Process	GO:0071788	endoplasmic reticulum tubular network maintenance	LNPK	IMP		Human	PMID:27619977
Biological Process	GO:1903373	positive regulation of endoplasmic reticulum tubular network organization	LNPK	IMP		Human	PMID:24223779
Biological Process	GO:1903373	positive regulation of endoplasmic reticulum tubular network organization	LNPK	IMP		Human	PMID:25404289
Biological Process	GO:0032330	regulation of chondrocyte differentiation	Lnpk	IMP		Mouse	PMID:22916278

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern