Comparative GO Graph (mouse, human, rat)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes HR
  • Mouse genes Hr
  • Rat genes Hr
  • Zfish genes
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Hr

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0042826	histone deacetylase binding	Hr	IDA		Rat	PMID:11641275|RGD:1599577
Molecular Function	GO:0046966	nuclear thyroid hormone receptor binding	Hr	IPI	RGD:3857	Rat	PMID:11641275|RGD:1599577
Molecular Function	GO:0046966	nuclear thyroid hormone receptor binding	Hr	IPI	RGD:3858	Rat	PMID:11641275|RGD:1599577
Molecular Function	GO:0042809	nuclear vitamin D receptor binding	Hr	IPI	RGD:619561	Rat	PMID:12847098|RGD:1599578
Molecular Function	GO:0005515	protein binding	HR	IPI	UniProtKB:A8MQ03	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	HR	IPI	UniProtKB:O15496	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	HR	IPI	UniProtKB:O43610	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	HR	IPI	UniProtKB:P10745	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	HR	IPI	UniProtKB:P49639	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	HR	IPI	UniProtKB:P57678	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	HR	IPI	UniProtKB:Q0VD86	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	HR	IPI	UniProtKB:Q3LI76	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	HR	IPI	UniProtKB:Q52LG2	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	HR	IPI	UniProtKB:Q5BKX5-3	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	HR	IPI	UniProtKB:Q86WV8	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	HR	IPI	UniProtKB:Q8IUC1	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	HR	IPI	UniProtKB:Q8NFV4-4	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	HR	IPI	UniProtKB:Q92567-2	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	HR	IPI	UniProtKB:Q99932-2	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	HR	IPI	UniProtKB:Q9BS75	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	HR	IPI	UniProtKB:Q9BYD5	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	HR	IPI	UniProtKB:Q9BYR6	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	HR	IPI	UniProtKB:Q9BYR8	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	HR	IPI	UniProtKB:Q9H0C1	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	HR	IPI	UniProtKB:Q9H5F2	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	HR	IPI	UniProtKB:Q9Y4X0-3	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	HR	IPI	UniProtKB:Q9Y6H3	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	Hr	IPI	PR:O88895	Mouse	PMID:11641275
Molecular Function	GO:0005515	protein binding	Hr	IPI	PR:O09106	Mouse	PMID:11641275
Molecular Function	GO:0005515	protein binding	Hr	IPI	PR:Q9Z2V6	Mouse	PMID:11641275
Molecular Function	GO:0005515	protein binding	Hr	IPI	PR:P63058	Mouse	PMID:11641275
Molecular Function	GO:0044877	protein-containing complex binding	Hr	IDA		Rat	PMID:12847098|RGD:1599578
Molecular Function	GO:0003714	transcription corepressor activity	Hr	IDA		Mouse	PMID:11641275
Molecular Function	GO:0003714	transcription corepressor activity	Hr	IDA		Rat	PMID:11641275|RGD:1599577
Cellular Component	GO:0000118	histone deacetylase complex	Hr	IDA		Rat	PMID:11641275|RGD:1599577
Cellular Component	GO:0016604	nuclear body	Hr	IDA		Mouse	PMID:11641275
Cellular Component	GO:0005654	nucleoplasm	HR	IDA		Human	GO_REF:0000052
Biological Process	GO:0043433	negative regulation of DNA-binding transcription factor activity	Hr	IDA		Rat	PMID:11641275|RGD:1599577
Biological Process	GO:0045892	negative regulation of DNA-templated transcription	Hr	IDA		Mouse	PMID:11641275

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern