Comparative GO Graph (mouse, human, rat, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes HOXD11
  • Mouse genes Hoxd11
  • Rat genes Hoxd11
  • Zfish genes hoxd11a
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Hoxd11

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:1990837	sequence-specific double-stranded DNA binding	HOXD11	IDA		Human	PMID:28473536
Cellular Component	GO:0005654	nucleoplasm	HOXD11	IDA		Human	GO_REF:0000052
Biological Process	GO:0009952	anterior/posterior pattern specification	Hoxd11	IGI	MGI:MGI:96193	Mouse	PMID:12869760
Biological Process	GO:0009952	anterior/posterior pattern specification	Hoxd11	IGI	MGI:MGI:96172	Mouse	PMID:12869760
Biological Process	GO:0001658	branching involved in ureteric bud morphogenesis	Hoxd11	IGI	MGI:MGI:96172	Mouse	PMID:11493536
Biological Process	GO:0060351	cartilage development involved in endochondral bone morphogenesis	Hoxd11	IGI	MGI:MGI:96172	Mouse	PMID:14668414
Biological Process	GO:0048468	cell development	Hoxd11	IGI	MGI:MGI:96172	Mouse	PMID:14668414
Biological Process	GO:0002063	chondrocyte development	Hoxd11	IGI	MGI:MGI:96172	Mouse	PMID:14668414
Biological Process	GO:0002062	chondrocyte differentiation	Hoxd11	IGI	MGI:MGI:96172	Mouse	PMID:14668414
Biological Process	GO:0048589	developmental growth	Hoxd11	IGI	MGI:MGI:96172	Mouse	PMID:14668414
Biological Process	GO:0009953	dorsal/ventral pattern formation	Hoxd11	IGI	MGI:MGI:96172	Mouse	PMID:11493536
Biological Process	GO:0042733	embryonic digit morphogenesis	Hoxd11	IGI	MGI:MGI:95729	Mouse	PMID:17714700
Biological Process	GO:0042733	embryonic digit morphogenesis	Hoxd11	IGI	MGI:MGI:96204	Mouse	PMID:8900279
Biological Process	GO:0042733	embryonic digit morphogenesis	Hoxd11	IGI	MGI:MGI:96205	Mouse	PMID:8900279
Biological Process	GO:0042733	embryonic digit morphogenesis	Hoxd11	IGI	MGI:MGI:96172	Mouse	PMID:12869760
Biological Process	GO:0042733	embryonic digit morphogenesis	Hoxd11	IGI	MGI:MGI:96204	Mouse	PMID:17714700
Biological Process	GO:0042733	embryonic digit morphogenesis	Hoxd11	IGI	MGI:MGI:96205	Mouse	PMID:17714700
Biological Process	GO:0042733	embryonic digit morphogenesis	Hoxd11	IGI	MGI:MGI:96193	Mouse	PMID:12869760
Biological Process	GO:0035115	embryonic forelimb morphogenesis	Hoxd11	IGI	MGI:MGI:96172	Mouse	PMID:22916278
Biological Process	GO:0030326	embryonic limb morphogenesis	Hoxd11	IGI	MGI:MGI:96172	Mouse	PMID:14668414
Biological Process	GO:0060272	embryonic skeletal joint morphogenesis	Hoxd11	IGI	MGI:MGI:96172	Mouse	PMID:20978074
Biological Process	GO:0060272	embryonic skeletal joint morphogenesis	Hoxd11	IGI	MGI:MGI:96193	Mouse	PMID:20978074
Biological Process	GO:0001656	metanephros development	Hoxd11	IGI	MGI:MGI:96193	Mouse	PMID:12050119
Biological Process	GO:0001656	metanephros development	Hoxd11	IGI	MGI:MGI:96172	Mouse	PMID:12050119
Biological Process	GO:0001759	organ induction	Hoxd11	IGI	MGI:MGI:96172	Mouse	PMID:12050119
Biological Process	GO:0001759	organ induction	Hoxd11	IGI	MGI:MGI:96193	Mouse	PMID:12050119
Biological Process	GO:0007389	pattern specification process	Hoxd11	IGI	MGI:MGI:96205	Mouse	PMID:8900279
Biological Process	GO:0007389	pattern specification process	Hoxd11	IGI	MGI:MGI:96204	Mouse	PMID:8900279
Biological Process	GO:1902761	positive regulation of chondrocyte development	Hoxd11	IGI	MGI:MGI:96172	Mouse	PMID:14668414
Biological Process	GO:0032332	positive regulation of chondrocyte differentiation	Hoxd11	IGI	MGI:MGI:96172	Mouse	PMID:14668414
Biological Process	GO:0009954	proximal/distal pattern formation	Hoxd11	IGI	MGI:MGI:96172	Mouse	PMID:12869760
Biological Process	GO:0009954	proximal/distal pattern formation	Hoxd11	IGI	MGI:MGI:96193	Mouse	PMID:12869760
Biological Process	GO:0032330	regulation of chondrocyte differentiation	Hoxd11	IGI	MGI:MGI:96172	Mouse	PMID:22916278
Biological Process	GO:0010468	regulation of gene expression	Hoxd11	IGI	MGI:MGI:96202	Mouse	PMID:23760953
Biological Process	GO:0010468	regulation of gene expression	Hoxd11	IGI	MGI:MGI:96210	Mouse	PMID:23760953
Biological Process	GO:0007338	single fertilization	Hoxd11	IGI	MGI:MGI:96202	Mouse	PMID:23760953
Biological Process	GO:0007338	single fertilization	Hoxd11	IGI	MGI:MGI:96210	Mouse	PMID:23760953
Biological Process	GO:0001501	skeletal system development	Hoxd11	IGI	MGI:MGI:96172	Mouse	PMID:12869760
Biological Process	GO:0001501	skeletal system development	Hoxd11	IGI	MGI:MGI:96193	Mouse	PMID:12869760
Biological Process	GO:0001501	skeletal system development	Hoxd11	IMP	MGI:MGI:1857963	Mouse	PMID:7925020

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern