Comparative GO Graph (mouse, human, rat, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes HMX1
  • Mouse genes Hmx1
  • Rat genes Hmx1
  • Zfish genes hmx1
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Hmx1

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0003677	DNA binding	HMX1	IMP		Human	PMID:10206974
Molecular Function	GO:0003677	DNA binding	Hmx1	IMP		Mouse	MGI:MGI:1266891|PMID:9628823
Molecular Function	GO:0001227	DNA-binding transcription repressor activity, RNA polymerase II-specific	Hmx1	IMP		Mouse	MGI:MGI:3773266|PMID:10206974
Molecular Function	GO:0000977	RNA polymerase II transcription regulatory region sequence-specific DNA binding	Hmx1	IMP		Mouse	MGI:MGI:3773266|PMID:10206974
Molecular Function	GO:1990837	sequence-specific double-stranded DNA binding	HMX1	IDA		Human	PMID:28473536
Biological Process	GO:0043010	camera-type eye development	hmx1	IMP	ZFIN:ZDB-MRPHLNO-080513-1	Zfish	PMID:18423520
Biological Process	GO:0002088	lens development in camera-type eye	hmx1	IMP	ZFIN:ZDB-GENO-211118-2	Zfish	PMID:33465110
Biological Process	GO:0002088	lens development in camera-type eye	hmx1	IMP	ZFIN:ZDB-GENO-211118-1	Zfish	PMID:33465110
Biological Process	GO:0045892	negative regulation of DNA-templated transcription	HMX1	IMP		Human	PMID:10206974
Biological Process	GO:0045892	negative regulation of DNA-templated transcription	Hmx1	IMP		Mouse	MGI:MGI:1266891|PMID:9628823
Biological Process	GO:0000122	negative regulation of transcription by RNA polymerase II	Hmx1	IMP		Mouse	MGI:MGI:3773266|PMID:10206974
Biological Process	GO:0060042	retina morphogenesis in camera-type eye	hmx1	IMP	ZFIN:ZDB-MRPHLNO-080513-1	Zfish	PMID:23068565
Biological Process	GO:0046549	retinal cone cell development	hmx1	IMP	ZFIN:ZDB-MRPHLNO-080513-1	Zfish	PMID:23068565

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern