Comparative GO Graph (mouse, human, rat, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes HGD
  • Mouse genes Hgd
  • Rat genes Hgd
  • Zfish genes hgd
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Hgd

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0004411	homogentisate 1,2-dioxygenase activity	HGD	IMP		Human	PMID:8782815
Molecular Function	GO:0004411	homogentisate 1,2-dioxygenase activity	Hgd	IDA		Mouse	MGI:MGI:6867296|PMID:7705358
Molecular Function	GO:0042802	identical protein binding	HGD	IPI	UniProtKB:Q93099	Human	PMID:25416956
Molecular Function	GO:0042802	identical protein binding	HGD	IPI	UniProtKB:Q93099	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	HGD	IPI	UniProtKB:P54274	Human	PMID:21044950
Molecular Function	GO:0005515	protein binding	HGD	IPI	UniProtKB:Q96HA8	Human	PMID:32296183
Cellular Component	GO:0070062	extracellular exosome	HGD	HDA		Human	PMID:19056867
Cellular Component	GO:0070062	extracellular exosome	HGD	HDA		Human	PMID:23533145
Biological Process	GO:0006520	amino acid metabolic process	Hgd	IMP	MGI:MGI:1856664	Mouse	PMID:8188247

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern