Comparative GO Graph (mouse, human, rat, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes HABP4
  • Mouse genes Habp4
  • Rat genes Habp4
  • Zfish genes zgc:103482
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Habp4

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0005515	protein binding	HABP4	IPI	UniProtKB:A0A096MJY4	Human	PMID:15862299
Molecular Function	GO:0005515	protein binding	HABP4	IPI	UniProtKB:Q99873	Human	PMID:16169070
Molecular Function	GO:0005515	protein binding	HABP4	IPI	UniProtKB:Q99873	Human	PMID:16879614
Molecular Function	GO:0005515	protein binding	HABP4	IPI	UniProtKB:O60506	Human	PMID:19523114
Molecular Function	GO:0005515	protein binding	HABP4	IPI	UniProtKB:Q13242	Human	PMID:19523114
Molecular Function	GO:0005515	protein binding	HABP4	IPI	UniProtKB:Q06787	Human	PMID:21771594
Molecular Function	GO:0005515	protein binding	Habp4	IPI	UniProtKB:A0A096MJY4	Rat	PMID:15862299|RGD:8553316
Molecular Function	GO:0032183	SUMO binding	HABP4	IDA		Human	PMID:28695742
Cellular Component	GO:0015030	Cajal body	HABP4	IDA		Human	PMID:19523114
Cellular Component	GO:0005737	cytoplasm	HABP4	IDA		Human	PMID:16879614
Cellular Component	GO:0005737	cytoplasm	HABP4	IDA		Human	PMID:19523114
Cellular Component	GO:0005737	cytoplasm	Habp4	IDA		Mouse	PMID:10887182
Cellular Component	GO:0005737	cytoplasm	Habp4	IDA		Rat	PMID:15862299|RGD:8553316
Cellular Component	GO:0010494	cytoplasmic stress granule	HABP4	IDA		Human	PMID:21771594
Cellular Component	GO:0005829	cytosol	HABP4	IDA		Human	GO_REF:0000052
Cellular Component	GO:0097504	Gemini of coiled bodies	HABP4	IDA		Human	PMID:19523114
Cellular Component	GO:0031965	nuclear membrane	HABP4	IDA		Human	GO_REF:0000052
Cellular Component	GO:0016607	nuclear speck	HABP4	IDA		Human	PMID:19523114
Cellular Component	GO:0005730	nucleolus	HABP4	IDA		Human	PMID:19523114
Cellular Component	GO:0005634	nucleus	HABP4	IDA		Human	PMID:16879614
Cellular Component	GO:0005634	nucleus	HABP4	IDA		Human	PMID:19523114
Cellular Component	GO:0005634	nucleus	Habp4	IDA		Rat	PMID:15862299|RGD:8553316
Cellular Component	GO:0030017	sarcomere	Habp4	IDA		Rat	PMID:15862299|RGD:8553316
Cellular Component	GO:0045202	synapse	Habp4	EXP		Mouse	PMID:25211037
Cellular Component	GO:0045202	synapse	Habp4	IDA		Mouse	PMID:25211037
Biological Process	GO:0071260	cellular response to mechanical stimulus	Habp4	IDA		Rat	PMID:15862299|RGD:8553316
Biological Process	GO:0043392	negative regulation of DNA binding	HABP4	IDA		Human	PMID:15862299
Biological Process	GO:0030578	PML body organization	HABP4	IDA		Human	PMID:28695742
Biological Process	GO:0033120	positive regulation of RNA splicing	HABP4	IMP		Human	PMID:19523114
Biological Process	GO:0045948	positive regulation of translational initiation	HABP4	IMP		Human	PMID:21771594

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern