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Habp4 Gene Detail
Summary
  • Symbol
    Habp4
  • Name
    hyaluronic acid binding protein 4
  • Synonyms
    4933413D03Rik, 4933428J01Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1891713
    NCBI Gene: 56541
  • Gene Overview
    MyGene.info: HABP4
Location & Maps
more
  • Sequence Map
    Chr13:64161866-64186536 bp, + strand
  • From Ensembl annotation of GRCm38

    Mouse Genome Browser

  • Download
    Sequence
      24671 bp   ±  kb flank

  • Genome Browsers
  • Genetic Map
    Chromosome 13, 33.26 cM, cytoband B3
  • Mapping Data
    3 experiments
Homology
more
  • Human Ortholog
    HABP4, hyaluronan binding protein 4
  • Vertebrate Orthologs
    10
  • Human Ortholog
    HABP4, hyaluronan binding protein 4
    Orthology source: HGNC, HomoloGene
  • Synonyms
    IHABP4, IHABP-4, Ki-1/57, SERBP1L
  • Links
    NCBI Gene ID: 22927
    neXtProt AC: NX_Q5JVS0

  • Chr Location
    9q22.3-q31; chr9:96450155-96491336 (+)  GRCh38.p2

  • HomoloGene
    Vertebrate Homology Class 8615
    1 human;1 mouse;1 rat;1 chimpanzee;1 rhesus macaque;1 cattle;1 dog;1 chicken;1 western clawed frog;1 zebrafish
  • HCOP
    human homology predictions: HABP4
  • Gene Tree
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    3 phenotype references
  • All Mutations and Alleles
    1
  • Chemically induced (other)
    1
  • Genomic Mutations
    1 involving Habp4
  • Incidental Mutations
    APF , CvDC
Gene Ontology
(GO)
Classifications
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  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
receptor
receptor binding
RNA binding
transcription
transferase
transporter
Biological Process

nucleic acid-templated transcription
carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
less
Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000021476 Ensembl Gene Model | MGI Sequence Detail 24671 C57BL/6J ±  kb
transcript ENSMUST00000021929 Ensembl | MGI Sequence Detail 2566 Not Applicable  
polypeptide ENSMUSP00000021929 Ensembl | MGI Sequence Detail 412 Not Applicable  
For the selected sequence
Polymorphisms
less
  • SNPs within 2kb
    389 from dbSNP Build 142
Protein
Information
less
  • UniProt
    4 Sequences
  • Protein Ontology
    PR:000008429 intracellular hyaluronan-binding protein 4
  • InterPro Domains
    IPR006861 Hyaluronan/mRNA-binding protein
    IPR032381 Intracellular hyaluronan-binding protein 4, N-terminal domain
Molecular
Reagents
less
  • All nucleic 51
    cDNA 50
    Primer pair 1

    Microarray probesets 5
Other
Accession IDs
less
MGI:1918402, MGI:1918461
References
more
  • Summaries
    All 27
    Developmental Gene Expression 3
    Gene Ontology 4
    Phenotypes 3
  • Earliest
    J:64828 Huang L, et al., Molecular characterization of a novel intracellular hyaluronan-binding protein. J Biol Chem. 2000 Sep 22;275(38):29829-39
  • Latest
    J:204704 Chew TG, et al., A tudor domain protein SPINDLIN1 interacts with the mRNA-binding protein SERBP1 and is involved in mouse oocyte meiotic resumption. PLoS One. 2013;8(7):e69764

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
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last database update
07/19/2016
MGI 6.04
The Jackson Laboratory