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Habp4 Gene Detail
Summary
  • Symbol
    Habp4
  • Name
    hyaluronic acid binding protein 4
  • Synonyms
    4933413D03Rik, 4933428J01Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1891713
    NCBI Gene: 56541
  • Gene Overview
    MyGene.info: HABP4
  • Alliance
  • Transcription Start Sites
    5 TSS
Location &
Maps
more
  • Sequence Map
    Chr13:64161866-64186537 bp, + strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 13, 33.26 cM, cytoband B3
  • Mapping Data
    3 experiments
Strain
Comparison
more
  • SNPs within 2kb
    389 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1891713
protein coding gene Chr13:64161824-64186537 (.)
129S1/SvImJ MGP_129S1SvImJ_G0020675
protein coding gene Chr13:64180369-64205870 (+)
A/J MGP_AJ_G0020629
protein coding gene Chr13:61852286-61878284 (+)
AKR/J MGP_AKRJ_G0020606
protein coding gene Chr13:63902621-63927491 (+)
BALB/cJ MGP_BALBcJ_G0020627
protein coding gene Chr13:62268852-62294592 (+)
C3H/HeJ MGP_C3HHeJ_G0020422
protein coding gene Chr13:63425076-63450457 (+)
C57BL/6NJ MGP_C57BL6NJ_G0021063
protein coding gene Chr13:66243028-66269064 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0018639
protein coding gene Chr13:59500996-59525410 (+)
CAST/EiJ MGP_CASTEiJ_G0019939
protein coding gene Chr13:63437661-63462314 (+)
CBA/J MGP_CBAJ_G0020382
protein coding gene Chr13:68798039-68822505 (+)
DBA/2J MGP_DBA2J_G0020507
protein coding gene Chr13:61682700-61707979 (+)
FVB/NJ MGP_FVBNJ_G0020486
protein coding gene Chr13:60783633-60808400 (+)
LP/J MGP_LPJ_G0020581
protein coding gene Chr13:64453056-64482561 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0020515
protein coding gene Chr13:67742901-67767374 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0021105
protein coding gene Chr13:63213554-63239098 (+)
PWK/PhJ MGP_PWKPhJ_G0019693
protein coding gene Chr13:61243610-61285321 (+)
SPRET/EiJ MGP_SPRETEiJ_G0019519
protein coding gene Chr13:61376437-61419556 (+)
WSB/EiJ MGP_WSBEiJ_G0019999
protein coding gene Chr13:63691040-63717229 (+)



Homology
more
  • Human Ortholog
    HABP4, hyaluronan binding protein 4
  • Vertebrate Orthologs
    10
  • Human Ortholog
    HABP4, hyaluronan binding protein 4
    Orthology source: HomoloGene, HGNC
  • Synonyms
    IHABP4, IHABP-4, Ki-1/57, SERBP1L
  • Links
    NCBI Gene ID: 22927
    neXtProt AC: NX_Q5JVS0
    UniProt: Q5JVS0

  • Chr Location
    9q22.32; chr9:96450155-96491336 (+)  GRCh38.p7

  • HomoloGene
    Vertebrate Homology Class 8615
    1 human;1 mouse;1 rat;1 chimpanzee;1 cattle;1 dog;1 chicken;1 zebrafish;1 frog, western clawed;1 macaque, rhesus
  • HCOP
    human homology predictions: HABP4
  • Gene Tree
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    3 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
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Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic 56541 NCBI Gene Model | MGI Sequence Detail 24672 C57BL/6J ±  kb
transcript NM_019986 RefSeq | MGI Sequence Detail 2584 C57BL/6  
polypeptide Q9JKS5 UniProt | EBI | MGI Sequence Detail 411 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    5 Sequences
  • InterPro Domains
    IPR006861 Hyaluronan/mRNA-binding protein
    IPR032381 Intracellular hyaluronan-binding protein 4, N-terminal domain
Molecular
Reagents
less
  • All nucleic 52
    cDNA 51
    Primer pair 1

    Microarray probesets 5
Other
Accession IDs
less
MGI:1918402, MGI:1918461
References
more
  • Summaries
    All 31
    Developmental Gene Expression 3
    Gene Ontology 4
    Phenotypes 3
  • Earliest
    J:182573 Roderick TH, Producing and detecting paracentric chromosomal inversions in mice. Mutat Res. 1971 Jan;11(1):59-69
  • Latest
    J:204704 Chew TG, et al., A tudor domain protein SPINDLIN1 interacts with the mRNA-binding protein SERBP1 and is involved in mouse oocyte meiotic resumption. PLoS One. 2013;8(7):e69764

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
11/06/2018
MGI 6.13
The Jackson Laboratory