Comparative GO Graph (mouse, human, rat, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes GMDS
  • Mouse genes Gmds
  • Rat genes Gmds
  • Zfish genes gmds
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Gmds

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0008417	fucosyltransferase activity	gmds	IMP	ZFIN:ZDB-GENO-101118-7	Zfish	PMID:21060795
Molecular Function	GO:0008446	GDP-mannose 4,6-dehydratase activity	GMDS	IDA		Human	PMID:9525924
Molecular Function	GO:0008446	GDP-mannose 4,6-dehydratase activity	GMDS	IGI	UniProtKB:Q8K3X3	Human	PMID:9603974
Molecular Function	GO:0042802	identical protein binding	GMDS	IPI	UniProtKB:O60547	Human	PMID:16189514
Molecular Function	GO:0042802	identical protein binding	GMDS	IPI	UniProtKB:O60547	Human	PMID:25416956
Molecular Function	GO:0042802	identical protein binding	GMDS	IPI	UniProtKB:O60547	Human	PMID:31515488
Molecular Function	GO:0042802	identical protein binding	GMDS	IPI	UniProtKB:O60547	Human	PMID:32296183
Molecular Function	GO:0070401	NADP+ binding	GMDS	IDA		Human	PMID:9525924
Molecular Function	GO:0005515	protein binding	GMDS	IPI	UniProtKB:Q96HA8	Human	PMID:25416956
Molecular Function	GO:0005515	protein binding	GMDS	IPI	UniProtKB:O43448	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	GMDS	IPI	UniProtKB:Q96HA8	Human	PMID:32296183
Cellular Component	GO:0070062	extracellular exosome	GMDS	HDA		Human	PMID:19199708
Biological Process	GO:0042351	'de novo' GDP-L-fucose biosynthetic process	GMDS	IDA		Human	PMID:9525924
Biological Process	GO:0021744	dorsal motor nucleus of vagus nerve development	gmds	IMP	ZFIN:ZDB-GENO-090610-10	Zfish	PMID:19369395
Biological Process	GO:0019673	GDP-mannose metabolic process	GMDS	IDA		Human	PMID:9525924
Biological Process	GO:0019673	GDP-mannose metabolic process	GMDS	IGI	UniProtKB:Q8K3X3	Human	PMID:9603974
Biological Process	GO:0007219	Notch signaling pathway	gmds	IMP	ZFIN:ZDB-MRPHLNO-101118-4	Zfish	PMID:21060795
Biological Process	GO:0007219	Notch signaling pathway	gmds	IMP	ZFIN:ZDB-GENO-101118-7	Zfish	PMID:21060795
Biological Process	GO:0010842	retina layer formation	gmds	IMP	ZFIN:ZDB-GENO-101118-7	Zfish	PMID:21060795
Biological Process	GO:0021564	vagus nerve development	gmds	IMP	ZFIN:ZDB-GENO-090610-10	Zfish	PMID:19369395

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern