Comparative GO Graph (mouse, human, rat, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes GGPS1
  • Mouse genes Ggps1
  • Rat genes Ggps1
  • Zfish genes ggps1
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Ggps1

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0004311	farnesyltranstransferase activity	GGPS1	IDA		Human	PMID:10026212
Molecular Function	GO:0004311	farnesyltranstransferase activity	GGPS1	IMP		Human	PMID:32403198
Molecular Function	GO:0004311	farnesyltranstransferase activity	GGPS1	IDA		Human	PMID:9741684
Molecular Function	GO:0004337	geranyltranstransferase activity	Ggps1	IDA		Mouse	PMID:10101267
Molecular Function	GO:0042802	identical protein binding	GGPS1	IPI	UniProtKB:O95749	Human	PMID:25416956
Molecular Function	GO:0042802	identical protein binding	GGPS1	IPI	UniProtKB:O95749	Human	PMID:31515488
Molecular Function	GO:0042802	identical protein binding	GGPS1	IPI	UniProtKB:O95749	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	GGPS1	IPI	UniProtKB:O00244	Human	PMID:25416956
Molecular Function	GO:0005515	protein binding	GGPS1	IPI	UniProtKB:O00560	Human	PMID:32296183
Cellular Component	GO:0005737	cytoplasm	GGPS1	IMP		Human	PMID:32403198
Cellular Component	GO:0005829	cytosol	GGPS1	IDA		Human	GO_REF:0000052
Cellular Component	GO:0005654	nucleoplasm	GGPS1	IDA		Human	GO_REF:0000052
Cellular Component	GO:0048471	perinuclear region of cytoplasm	GGPS1	IMP		Human	PMID:32403198
Cellular Component	GO:0030018	Z disc	GGPS1	IMP		Human	PMID:32403198
Biological Process	GO:0006720	isoprenoid metabolic process	GGPS1	IDA		Human	PMID:10026212

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern