Comparative GO Graph (mouse, human, rat)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes DDN
  • Mouse genes Ddn
  • Rat genes Ddn
  • Zfish genes
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Ddn

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0000981	DNA-binding transcription factor activity, RNA polymerase II-specific	Ddn	IDA		Rat	PMID:21911934|RGD:8554331
Molecular Function	GO:0005515	protein binding	DDN	IPI	UniProtKB:Q96QZ7	Human	PMID:16464232
Molecular Function	GO:0005515	protein binding	DDN	IPI	UniProtKB:O88382	Human	PMID:16751601
Molecular Function	GO:0005515	protein binding	DDN	IPI	UniProtKB:Q96B97	Human	PMID:16751601
Molecular Function	GO:0005515	protein binding	Ddn	IPI	UniProtKB:Q9Z1P2	Rat	PMID:16464232|RGD:21201256
Molecular Function	GO:0000978	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Ddn	IDA		Rat	PMID:21911934|RGD:8554331
Cellular Component	GO:0042995	cell projection	DDN	IDA		Human	PMID:16464232
Cellular Component	GO:0005737	cytoplasm	DDN	IDA		Human	PMID:16464232
Cellular Component	GO:0030425	dendrite	Ddn	IDA		Rat	PMID:9073398|RGD:1300453
Cellular Component	GO:0005634	nucleus	Ddn	IDA		Mouse	PMID:21911934
Cellular Component	GO:0005886	plasma membrane	Ddn	IDA		Mouse	PMID:21911934
Biological Process	GO:0045944	positive regulation of transcription by RNA polymerase II	Ddn	IDA		Rat	PMID:21911934|RGD:8554331

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern