Comparative GO Graph (mouse, human, rat, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes DBP
  • Mouse genes Dbp
  • Rat genes Dbp
  • Zfish genes dbpa,dbpb
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Dbp

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0001228	DNA-binding transcription activator activity, RNA polymerase II-specific	DBP	IDA		Human	PMID:20093779
Molecular Function	GO:0001228	DNA-binding transcription activator activity, RNA polymerase II-specific	Dbp	IDA		Rat	PMID:2331750|RGD:727680
Molecular Function	GO:0005515	protein binding	DBP	IPI	UniProtKB:P35638	Human	PMID:21988832
Molecular Function	GO:0005515	protein binding	DBP	IPI	UniProtKB:Q16534	Human	PMID:21988832
Molecular Function	GO:0005515	protein binding	DBP	IPI	UniProtKB:P35638	Human	PMID:23661758
Molecular Function	GO:0005515	protein binding	DBP	IPI	UniProtKB:Q16520	Human	PMID:23661758
Molecular Function	GO:0005515	protein binding	DBP	IPI	UniProtKB:Q16534	Human	PMID:23661758
Molecular Function	GO:0005515	protein binding	DBP	IPI	UniProtKB:Q9NR55	Human	PMID:23661758
Molecular Function	GO:0000977	RNA polymerase II transcription regulatory region sequence-specific DNA binding	DBP	IDA		Human	PMID:20093779
Molecular Function	GO:1990837	sequence-specific double-stranded DNA binding	DBP	IDA		Human	PMID:28473536
Cellular Component	GO:0005634	nucleus	Dbp	IDA		Rat	PMID:2331750|RGD:727680
Cellular Component	GO:0090575	RNA polymerase II transcription regulator complex	DBP	IPI		Human	PMID:23661758
Biological Process	GO:0001889	liver development	Dbp	IEP		Rat	PMID:2331750|RGD:727680
Biological Process	GO:0045944	positive regulation of transcription by RNA polymerase II	DBP	IDA		Human	PMID:20093779
Biological Process	GO:0045944	positive regulation of transcription by RNA polymerase II	Dbp	IDA		Rat	PMID:2331750|RGD:727680

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern