Comparative GO Graph (mouse, human, rat, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes COPA
  • Mouse genes Copa
  • Rat genes Copa
  • Zfish genes copa
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Copa

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0003729	mRNA binding	Copa	IDA		Mouse	PMID:21300694
Molecular Function	GO:0005515	protein binding	COPA	IPI	UniProtKB:Q5BJD5	Human	PMID:30352685
Molecular Function	GO:0005515	protein binding	Copa	IPI	UniProtKB:Q16637	Mouse	PMID:21300694
Molecular Function	GO:0005515	protein binding	Copa	IPI	PR:P97801	Mouse	PMID:21300694
Molecular Function	GO:0005515	protein binding	Copa	IPI	UniProtKB:Q9UHI6	Mouse	PMID:21300694
Molecular Function	GO:0005515	protein binding	Copa	IPI	UniProtKB:O14893	Mouse	PMID:21300694
Molecular Function	GO:0005515	protein binding	Copa	IPI	UniProtKB:P48444	Mouse	PMID:21300694
Cellular Component	GO:0030126	COPI vesicle coat	COPA	IDA		Human	PMID:14729954
Cellular Component	GO:0030137	COPI-coated vesicle	Copa	IDA		Mouse	PMID:29437892
Cellular Component	GO:0030137	COPI-coated vesicle	Copa	IDA		Mouse	PMID:21300694
Cellular Component	GO:0005737	cytoplasm	COPA	IDA		Human	PMID:9115636
Cellular Component	GO:0070062	extracellular exosome	COPA	HDA		Human	PMID:19199708
Cellular Component	GO:0005615	extracellular space	COPA	IDA		Human	PMID:1429581
Cellular Component	GO:0005794	Golgi apparatus	Copa	IDA		Mouse	PMID:21300694
Cellular Component	GO:0030426	growth cone	COPA	IDA		Human	PMID:21300694
Cellular Component	GO:0030426	growth cone	Copa	IDA		Mouse	PMID:21300694
Cellular Component	GO:0016020	membrane	COPA	HDA		Human	PMID:19946888
Biological Process	GO:0030903	notochord development	copa	IMP	ZFIN:ZDB-GENO-980202-165	Zfish	PMID:15469843
Biological Process	GO:0030903	notochord development	copa	IMP	ZFIN:ZDB-GENO-980202-1439	Zfish	PMID:9007233
Biological Process	GO:0030903	notochord development	copa	IMP	ZFIN:ZDB-GENO-980202-1044	Zfish	PMID:9007233
Biological Process	GO:0030903	notochord development	copa	IMP	ZFIN:ZDB-GENO-980202-1441	Zfish	PMID:9007233
Biological Process	GO:0030903	notochord development	copa	IMP	ZFIN:ZDB-MRPHLNO-060918-2	Zfish	PMID:15469843
Biological Process	GO:0030903	notochord development	copa	IMP	ZFIN:ZDB-GENO-980202-1442	Zfish	PMID:9007233
Biological Process	GO:0030903	notochord development	copa	IMP	ZFIN:ZDB-GENO-980202-1440	Zfish	PMID:9007233
Biological Process	GO:0030903	notochord development	copa	IMP	ZFIN:ZDB-GENO-980202-165	Zfish	PMID:9007234
Biological Process	GO:0030157	pancreatic juice secretion	COPA	IDA		Human	PMID:1429581
Biological Process	GO:0099612	protein localization to axon	Copa	IMP		Mouse	PMID:21300694
Biological Process	GO:1902463	protein localization to cell leading edge	Copa	IMP		Mouse	PMID:21300694
Biological Process	GO:0061053	somite development	copa	IMP	ZFIN:ZDB-GENO-980202-165	Zfish	PMID:9007234
Biological Process	GO:0061053	somite development	copa	IMP	ZFIN:ZDB-GENO-980202-1442	Zfish	PMID:9007233
Biological Process	GO:0061053	somite development	copa	IMP	ZFIN:ZDB-GENO-980202-1439	Zfish	PMID:9007233
Biological Process	GO:0061053	somite development	copa	IMP	ZFIN:ZDB-GENO-980202-1440	Zfish	PMID:9007233
Biological Process	GO:0061053	somite development	copa	IMP	ZFIN:ZDB-GENO-980202-1441	Zfish	PMID:9007233
Biological Process	GO:0061053	somite development	copa	IMP	ZFIN:ZDB-GENO-980202-1044	Zfish	PMID:9007233

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern