Comparative GO Graph (mouse, human, rat, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes COLEC12
  • Mouse genes Colec12
  • Rat genes Colec12
  • Zfish genes colec12
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Colec12

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0030169	low-density lipoprotein particle binding	COLEC12	IDA		Human	PMID:11564734
Molecular Function	GO:0038187	pattern recognition receptor activity	COLEC12	IDA		Human	PMID:11564734
Molecular Function	GO:0005515	protein binding	COLEC12	IPI	UniProtKB:Q9UKJ1	Human	PMID:22396535
Molecular Function	GO:0005515	protein binding	COLEC12	IPI	UniProtKB:P02741	Human	PMID:26922829
Molecular Function	GO:0005044	scavenger receptor activity	COLEC12	IDA		Human	PMID:11564734
Cellular Component	GO:0062023	collagen-containing extracellular matrix	Colec12	HDA		Mouse	MGI:MGI:6201834|PMID:22159717
Biological Process	GO:0071360	cellular response to exogenous dsRNA	COLEC12	IMP		Human	PMID:25204797
Biological Process	GO:0042742	defense response to bacterium	COLEC12	IDA		Human	PMID:11564734
Biological Process	GO:0006955	immune response	Colec12	IDA		Mouse	PMID:11564734
Biological Process	GO:0006910	phagocytosis, recognition	COLEC12	IDA		Human	PMID:11564734
Biological Process	GO:0044857	plasma membrane raft organization	COLEC12	IMP		Human	PMID:25204797
Biological Process	GO:0034138	toll-like receptor 3 signaling pathway	COLEC12	IMP		Human	PMID:25204797
Biological Process	GO:0001570	vasculogenesis	colec12	IMP	ZFIN:ZDB-MRPHLNO-120103-2	Zfish	PMID:22001438

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern