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Colec12 Gene Detail
Summary
  • Symbol
    Colec12
  • Name
    collectin sub-family member 12
  • Synonyms
    CL-P1, Scara4, SRCL
  • Feature Type
    protein coding gene
  • IDs
    MGI:2152907
    NCBI Gene: 140792
Location & Maps
more
  • Sequence Map
    Chr18:9707648-9877995 bp, + strand
  • From NCBI annotation of GRCm38

    Mouse Genome Browser

  • Download
    Sequence
      170348 bp   ±  kb flank

  • Genome Browsers
  • Genetic Map
    Chromosome 18, 4.91 cM
  • Mapping Data
    1 experiment
Homology
more
  • Human Ortholog
    COLEC12, collectin subfamily member 12
  • Vertebrate Orthologs
    10
  • Human Ortholog
    COLEC12, collectin subfamily member 12
    Orthology source: HomoloGene, HGNC
  • Synonyms
    CLP1, NSR2, SCARA4, SRCL
  • Links
    NCBI Gene ID: 81035
    neXtProt AC: NX_Q5KU26

  • Chr Location
    18p11.32; chr18:319355-500729 (-)  GRCh38.p2

Mutations,
Alleles, and
Phenotypes
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  • Phenotype Summary
    3 phenotype references
Gene Ontology
(GO)
Classifications
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  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
receptor
receptor binding
RNA binding
transcription
transferase
transporter
Biological Process

nucleic acid-templated transcription
carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
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Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
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Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic 140792 NCBI Gene Model | MGI Sequence Detail 170348 C57BL/6J ±  kb
transcript NM_130449 RefSeq | MGI Sequence Detail 3322 C57BL/6  
polypeptide Q8K4Q8 UniProt | EBI | MGI Sequence Detail 742 Not Applicable  
For the selected sequence
Polymorphisms
less
  • SNPs within 2kb
    571 from dbSNP Build 142
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 48
    cDNA 48

    Microarray probesets 3
References
more
  • Summaries
    All 27
    Developmental Gene Expression 2
    Gene Ontology 3
    Phenotypes 3
  • Earliest
    J:72785 Ohtani K, et al., The membrane-type collectin CL-P1 is a scavenger receptor on vascular endothelial cells. J Biol Chem. 2001 Nov 23;276(47):44222-8
  • Latest
    J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
09/20/2016
MGI 6.05
The Jackson Laboratory