Comparative GO Graph (mouse, human, rat, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes CIART
  • Mouse genes Ciart
  • Rat genes Ciart
  • Zfish genes ciarta
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Ciart

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0070888	E-box binding	Ciart	IDA		Mouse	MGI:MGI:5568140|PMID:24736997
Molecular Function	GO:0005515	protein binding	CIART	IPI	UniProtKB:O00327	Human	PMID:24385426
Molecular Function	GO:0005515	protein binding	CIART	IPI	UniProtKB:O54943	Human	PMID:24737000
Molecular Function	GO:0005515	protein binding	CIART	IPI	UniProtKB:Q9WTL8	Human	PMID:24737000
Molecular Function	GO:0005515	protein binding	CIART	IPI	UniProtKB:O75553	Human	PMID:25416956
Molecular Function	GO:0005515	protein binding	CIART	IPI	UniProtKB:Q13952-2	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	CIART	IPI	UniProtKB:P13473-2	Human	PMID:32814053
Molecular Function	GO:0005515	protein binding	CIART	IPI	UniProtKB:P55212	Human	PMID:32814053
Molecular Function	GO:0005515	protein binding	Ciart	IPI	UniProtKB:O09106|UniProtKB:O54943|UniProtKB:P06537|UniProtKB:Q99PV5|UniProtKB:Q9R194|UniProtKB:Q9WTL8	Mouse	MGI:MGI:5568140|PMID:24736997
Molecular Function	GO:0005515	protein binding	Ciart	IPI	UniProtKB:O54943|UniProtKB:Q9WTL8	Mouse	MGI:MGI:5545849|PMID:24385426
Molecular Function	GO:0005515	protein binding	Ciart	IPI	UniProtKB:O09106|UniProtKB:O54943|UniProtKB:Q99PV5|UniProtKB:Q9R194|UniProtKB:Q9WTL8	Mouse	MGI:MGI:5568140|PMID:24736997
Molecular Function	GO:0000978	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Ciart	IDA		Mouse	MGI:MGI:5545849|PMID:24385426
Cellular Component	GO:0005634	nucleus	Ciart	IDA		Mouse	MGI:MGI:5545849|PMID:24385426
Biological Process	GO:0032922	circadian regulation of gene expression	Ciart	IMP		Mouse	MGI:MGI:5568140|PMID:24736997
Biological Process	GO:0032922	circadian regulation of gene expression	Ciart	IMP		Mouse	MGI:MGI:5545849|PMID:24385426
Biological Process	GO:0045475	locomotor rhythm	Ciart	IMP		Mouse	MGI:MGI:5568140|PMID:24736997
Biological Process	GO:0045892	negative regulation of DNA-templated transcription	Ciart	IDA		Mouse	MGI:MGI:5545849|PMID:24385426
Biological Process	GO:0045892	negative regulation of DNA-templated transcription	Ciart	IDA		Mouse	MGI:MGI:5568140|PMID:24736997

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern