Comparative GO Graph (mouse, human, rat, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes CASKIN1
  • Mouse genes Caskin1
  • Rat genes Caskin1
  • Zfish genes caskin1,si:dkeyp-9d4.3
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Caskin1

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0042802	identical protein binding	CASKIN1	IPI	UniProtKB:Q8WXD9	Human	PMID:21763699
Molecular Function	GO:0042802	identical protein binding	CASKIN1	IPI	UniProtKB:Q8WXD9	Human	PMID:22153505
Molecular Function	GO:0005515	protein binding	CASKIN1	IPI	UniProtKB:O14936	Human	PMID:21763699
Molecular Function	GO:0005515	protein binding	CASKIN1	IPI	UniProtKB:O14936-2	Human	PMID:22153505
Molecular Function	GO:0005515	protein binding	Caskin1	IPI	UniProtKB:Q62915	Rat	PMID:12040031|RGD:632380
Molecular Function	GO:0005515	protein binding	Caskin1	IPI	UniProtKB:Q9NYB9	Rat	PMID:19523119|RGD:8554442
Molecular Function	GO:0019904	protein domain specific binding	Caskin1	IDA		Rat	PMID:12040031|RGD:632380
Cellular Component	GO:0005737	cytoplasm	Caskin1	IDA		Rat	PMID:12040031|RGD:632380
Biological Process	GO:0007165	signal transduction	Caskin1	IPI	UniProtKB:Q62915	Rat	PMID:12040031|RGD:632380

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern