Comparative GO Graph (mouse, human, rat, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes ATL3
  • Mouse genes Atl3
  • Rat genes Atl3
  • Zfish genes atl3
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Atl3

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0042802	identical protein binding	ATL3	IDA		Human	PMID:18270207
Molecular Function	GO:0005515	protein binding	ATL3	IPI	UniProtKB:Q5T4F4	Human	PMID:23969831
Molecular Function	GO:0005515	protein binding	ATL3	IPI	UniProtKB:Q00765	Human	PMID:32075961
Molecular Function	GO:0005515	protein binding	Atl3	IPI	UniProtKB:Q60870	Mouse	MGI:MGI:6401630|PMID:32075961
Cellular Component	GO:0005783	endoplasmic reticulum	ATL3	IDA		Human	GO_REF:0000052
Cellular Component	GO:0005783	endoplasmic reticulum	ATL3	IDA		Human	PMID:18270207
Cellular Component	GO:0071782	endoplasmic reticulum tubular network	ATL3	IDA		Human	PMID:23969831
Cellular Component	GO:0098826	endoplasmic reticulum tubular network membrane	ATL3	IDA		Human	PMID:25548161
Cellular Component	GO:0098826	endoplasmic reticulum tubular network membrane	ATL3	IDA		Human	PMID:27619977
Cellular Component	GO:0016020	membrane	ATL3	IDA		Human	PMID:18270207
Cellular Component	GO:0016020	membrane	ATL3	HDA		Human	PMID:19946888
Biological Process	GO:0007029	endoplasmic reticulum organization	ATL3	IMP		Human	PMID:18270207
Biological Process	GO:0007029	endoplasmic reticulum organization	ATL3	IMP		Human	PMID:19665976
Biological Process	GO:0007030	Golgi organization	ATL3	IMP		Human	PMID:18270207
Biological Process	GO:1903373	positive regulation of endoplasmic reticulum tubular network organization	ATL3	IMP		Human	PMID:27619977
Biological Process	GO:0051260	protein homooligomerization	ATL3	IDA		Human	PMID:18270207

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern