About   Help   FAQ
Atl3 Gene Detail
Summary
  • Symbol
    Atl3
  • Name
    atlastin GTPase 3
  • Synonyms
    4633402C03Rik, 5730596K20Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1924270
    NCBI Gene: 109168
  • Alliance
  • Transcription Start Sites
    7 TSS
Location &
Maps
more
  • Sequence Map
    Chr19:7494040-7538608 bp, + strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 19, 5.32 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    195 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1924270
protein coding gene Chr19:7494026-7538609 (+)
129S1/SvImJ MGP_129S1SvImJ_G0024793
protein coding gene Chr19:4633412-4685694 (+)
A/J MGP_AJ_G0024760
protein coding gene Chr19:4272198-4330884 (+)
AKR/J MGP_AKRJ_G0024733
protein coding gene Chr19:4407144-4452916 (+)
BALB/cJ MGP_BALBcJ_G0024760
protein coding gene Chr19:4386023-4431201 (+)
C3H/HeJ MGP_C3HHeJ_G0024527
protein coding gene Chr19:4541426-4589782 (+)
C57BL/6NJ MGP_C57BL6NJ_G0025206
protein coding gene Chr19:4733516-4784334 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0022640
protein coding gene Chr19:4181466-4224390 (+)
CAST/EiJ MGP_CASTEiJ_G0024000
protein coding gene Chr19:4454876-4502539 (+)
CBA/J MGP_CBAJ_G0024500
protein coding gene Chr19:4796299-4848785 (+)
DBA/2J MGP_DBA2J_G0024627
protein coding gene Chr19:4235498-4281327 (+)
FVB/NJ MGP_FVBNJ_G0024592
protein coding gene Chr19:4279025-4323568 (+)
LP/J MGP_LPJ_G0024713
protein coding gene Chr19:4486038-4534746 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0024622
protein coding gene Chr19:4699319-4751419 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0025254
protein coding gene Chr19:4575220-4621987 (+)
PWK/PhJ MGP_PWKPhJ_G0023746
protein coding gene Chr19:4301915-4347622 (+)
SPRET/EiJ MGP_SPRETEiJ_G0023550
protein coding gene Chr19:4374190-4418123 (+)
WSB/EiJ MGP_WSBEiJ_G0024062
protein coding gene Chr19:4469332-4515881 (+)



Homology
more
  • Human Ortholog
    ATL3, atlastin GTPase 3
  • Vertebrate Orthologs
    9
  • Human Ortholog
    ATL3, atlastin GTPase 3
    Orthology source: HomoloGene, HGNC
  • Synonyms
    HSN1F
  • Links
    NCBI Gene ID: 25923
    neXtProt AC: NX_Q6DD88
    UniProt: Q6DD88

  • Chr Location
    11q13.1; chr11:63624082-63671974 (-)  GRCh38.p7

  • HomoloGene
    Vertebrate Homology Class 9149
    1 human;1 mouse;1 rat;1 chimpanzee;1 cattle;1 dog;1 zebrafish;1 frog, western clawed;1 macaque, rhesus
  • HCOP
    human homology predictions: ATL3
  • Gene Tree
Human Diseases
more
  • Diseases
    1 with human ATL3 associations

Human Disease Mouse Models
      
IDs
Click on a disease name to see all genes associated with that disease.

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    8 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell population proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000024759 Ensembl Gene Model | MGI Sequence Detail 44569 C57BL/6J ±  kb
transcript ENSMUST00000025668 Ensembl | MGI Sequence Detail 6376 Not Applicable  
polypeptide ENSMUSP00000025668 Ensembl | MGI Sequence Detail 541 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 91
    cDNA 91

    Microarray probesets 10
Other
Accession IDs
less
MGI:1918076, MGI:2147563, MGI:2147723
References
more
  • Summaries
    All 35
    Developmental Gene Expression 1
    Gene Ontology 3
    Phenotypes 8
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:260950 Zhao G, et al., Mammalian knock out cells reveal prominent roles for atlastin GTPases in ER network morphology. Exp Cell Res. 2016 Nov 15;349(1):32-44

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
Warranty Disclaimer & Copyright Notice
Send questions and comments to User Support.
last database update
03/13/2019
MGI 6.13
The Jackson Laboratory