Comparative GO Graph (mouse, human, rat, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes AHRR
  • Mouse genes Ahrr
  • Rat genes Ahrr
  • Zfish genes ahrra,ahrrb
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Ahrr

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0003677	DNA binding	ahrra	IDA		Zfish	PMID:18000031
Molecular Function	GO:0005515	protein binding	AHRR	IPI	UniProtKB:Q9BE97	Human	PMID:28904176
Cellular Component	GO:0005829	cytosol	AHRR	IDA		Human	GO_REF:0000052
Cellular Component	GO:0005654	nucleoplasm	AHRR	IDA		Human	GO_REF:0000052
Cellular Component	GO:0005634	nucleus	Ahrr	IDA		Mouse	MGI:MGI:4359338|PMID:19251700
Cellular Component	GO:0005634	nucleus	ahrra	IDA		Zfish	PMID:18000031
Biological Process	GO:0071466	cellular response to xenobiotic stimulus	ahrra	IDA		Zfish	PMID:16122694
Biological Process	GO:0071466	cellular response to xenobiotic stimulus	ahrrb	IDA		Zfish	PMID:16122694
Biological Process	GO:0045892	negative regulation of DNA-templated transcription	Ahrr	IDA		Mouse	MGI:MGI:4359338|PMID:19251700
Biological Process	GO:0000122	negative regulation of transcription by RNA polymerase II	Ahrr	IDA		Mouse	MGI:MGI:4359338|PMID:19251700
Biological Process	GO:0033235	positive regulation of protein sumoylation	Ahrr	IDA		Mouse	MGI:MGI:4359338|PMID:19251700
Biological Process	GO:0010468	regulation of gene expression	ahrra	IDA		Zfish	PMID:16122694
Biological Process	GO:0010468	regulation of gene expression	ahrrb	IDA		Zfish	PMID:16122694
Biological Process	GO:0006357	regulation of transcription by RNA polymerase II	ahrra	IMP	ZFIN:ZDB-MRPHLNO-100513-5	Zfish	PMID:19494032
Biological Process	GO:0006357	regulation of transcription by RNA polymerase II	ahrra	IMP	ZFIN:ZDB-MRPHLNO-100513-6	Zfish	PMID:19494032
Biological Process	GO:0006357	regulation of transcription by RNA polymerase II	ahrrb	IMP	ZFIN:ZDB-MRPHLNO-100513-7	Zfish	PMID:19494032

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern