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Gene Expression Data
Assay Details
Assay
Reference: J:51656 Marcus RC, et al., Domains of regulatory gene expression and the developing optic chiasm: correspondence with retinal axon paths and candidate signaling cells. J Comp Neurol. 1999 Jan 18;403(3):346-58
Assay type: RNA in situ
MGI Accession ID: MGI:7539094
Gene symbol: Shh
Gene name: sonic hedgehog
Probe: Shh probe
Probe preparation: Antisense RNA
Visualized with: Alkaline phosphatase
Results
Specimen 2A: embryonic day 11.0-11.5 (more )
Note: Double labeled: brown - Shh; blue - Dlx2 (assay MGI:7539087).
Structure Level Pattern Image Note
TS19: telencephalon Present Regionally restricted 2A Expression is in the preoptic area and the medial ganglionic eminence.
TS19: diencephalon Present Regionally restricted 2A Expression is in the mammillary, tuberal, and retrochiasmatic areas in the hypothalamus.
Specimen 2B: embryonic day 11.0-11.5 (more )
Note: Double labeled: brown - Shh; blue - Dlx2 (assay MGI:7539087).
Structure Level Pattern Image Note
TS19: telencephalon Present Regionally restricted 2B Expression is in the preoptic area and the medial ganglionic eminence.
TS19: diencephalon Present Regionally restricted 2B Expression is in the mammillary, tuberal, and retrochiasmatic areas in the hypothalamus.
Specimen 2C: embryonic day 11.0-11.5 (more )
Note: Double labeled: brown - Shh; blue - Dlx2 (assay MGI:7539087).
Structure Level Pattern Image Note
TS19: diencephalon ventricular layer Present 2C
Specimen 2D: embryonic day 11.0-11.5 (more )
Note: Double labeled: brown - Shh; blue - Nkx2-2 (assay MGI:7539088).
Structure Level Pattern Image Note
TS19: telencephalon Present Regionally restricted 2D Expression is in the preoptic area and the medial ganglionic eminence.
TS19: diencephalon Present Regionally restricted 2D Expression is in the mammillary, tuberal, and retrochiasmatic areas in the hypothalamus.
Specimen 2E: embryonic day 11.0-11.5 (more )
Note: Double labeled: brown - Shh; blue - Nkx2-2 (assay MGI:7539088).
Structure Level Pattern Image Note
TS19: telencephalon Present Regionally restricted 2E Expression is in the preoptic area and the medial ganglionic eminence.
TS19: diencephalon Present Regionally restricted 2E Expression is in the mammillary, tuberal, and retrochiasmatic areas in the hypothalamus.
Specimen 2F: embryonic day 11.0-11.5 (more )
Note: Double labeled: brown - Shh; blue - Nkx2-2 (assay MGI:7539088).
Structure Level Pattern Image Note
TS19: diencephalon ventricular layer Present 2F
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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03/25/2025
MGI 6.24 		The Jackson Laboratory