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Phenotypes associated with this allele
Allele Symbol
Allele Name
Allele ID
Kdm6atm1c(EUCOMM)Wtsi
targeted mutation 1c, Wellcome Trust Sanger Institute
MGI:5516010
Summary 10 genotypes
Jump to Allelic Composition Genetic Background Genotype ID
hm1
Kdm6atm1c(EUCOMM)Wtsi/Kdm6atm1c(EUCOMM)Wtsi either: (involves: C57BL/6 * CD-1) or (involves: 129 * C57BL/6 * CD-1) MGI:5516065
cn2
Kdm6atm1c(EUCOMM)Wtsi/Kdm6atm1c(EUCOMM)Wtsi
Edil3Tg(Sox2-cre)1Amc/Edil3+
either: (involves: C57BL/6 * CBA * CD-1) or (involves: 129 * C57BL/6 * CBA * CD-1) MGI:5516066
cn3
Kdm6atm1c(EUCOMM)Wtsi/Y
Edil3Tg(Sox2-cre)1Amc/Edil3+
either: (involves: C57BL/6 * CBA * CD-1) or (involves: 129 * C57BL/6 * CBA * CD-1) MGI:5516067
cn4
Kdm6atm1c(EUCOMM)Wtsi/Kdm6atm1c(EUCOMM)Wtsi
Pax3tm1(cre)Joe/Pax3+
involves: 129S1/Sv * 129X1/SvJ * C57BL/6J * C57BL/6N MGI:8363224
cn5
Kdm6atm1c(EUCOMM)Wtsi/Y
Pax3tm1(cre)Joe/Pax3+
involves: 129S1/Sv * 129X1/SvJ * C57BL/6J * C57BL/6N MGI:8363223
cn6
Kdm6atm1c(EUCOMM)Wtsi/Kdm6atm1c(EUCOMM)Wtsi
H2az2Tg(Wnt1-cre)11Rth/H2az2+
involves: C57BL/6J * C57BL/6N * CBA MGI:7333177
cn7
Kdm6atm1c(EUCOMM)Wtsi/Y
H2az2Tg(Wnt1-cre)11Rth/H2az2+
involves: C57BL/6J * C57BL/6N * CBA MGI:7333176
cn8
Kdm6atm1c(EUCOMM)Wtsi/Y
H2az2Tg(Wnt1-cre)11Rth/H2az2+
involves: C57BL/6J * C57BL/6N * CBA/J MGI:8363222
cn9
Kdm6atm1c(EUCOMM)Wtsi/Kdm6atm1c(EUCOMM)Wtsi
H2az2Tg(Wnt1-cre)11Rth/H2az2+
involves: C57BL/6J * C57BL/6N * CBA/J MGI:7471469
ot10
Kdm6atm1c(EUCOMM)Wtsi/Y either: (involves: C57BL/6 * CD-1) or (involves: 129 * C57BL/6 * CD-1) MGI:5516064


Genotype
MGI:5516065
hm1
Allelic
Composition
Kdm6atm1c(EUCOMM)Wtsi/Kdm6atm1c(EUCOMM)Wtsi
Genetic
Background
either: (involves: C57BL/6 * CD-1) or (involves: 129 * C57BL/6 * CD-1)
Find Mice Using the International Mouse Strain Resource (IMSR)
Mouse lines carrying:
Kdm6atm1c(EUCOMM)Wtsi mutation (1 available); any Kdm6a mutation (38 available)
phenotype observed in females
phenotype observed in males
N normal phenotype
mortality/aging

nervous system
• in about half of embryos

embryo
• in about half of embryos




Genotype
MGI:5516066
cn2
Allelic
Composition
Kdm6atm1c(EUCOMM)Wtsi/Kdm6atm1c(EUCOMM)Wtsi
Edil3Tg(Sox2-cre)1Amc/Edil3+
Genetic
Background
either: (involves: C57BL/6 * CBA * CD-1) or (involves: 129 * C57BL/6 * CBA * CD-1)
Find Mice Using the International Mouse Strain Resource (IMSR)
Mouse lines carrying:
Edil3Tg(Sox2-cre)1Amc mutation (5 available); any Edil3 mutation (44 available)
Kdm6atm1c(EUCOMM)Wtsi mutation (1 available); any Kdm6a mutation (38 available)
phenotype observed in females
phenotype observed in males
N normal phenotype
mortality/aging




Genotype
MGI:5516067
cn3
Allelic
Composition
Kdm6atm1c(EUCOMM)Wtsi/Y
Edil3Tg(Sox2-cre)1Amc/Edil3+
Genetic
Background
either: (involves: C57BL/6 * CBA * CD-1) or (involves: 129 * C57BL/6 * CBA * CD-1)
Find Mice Using the International Mouse Strain Resource (IMSR)
Mouse lines carrying:
Edil3Tg(Sox2-cre)1Amc mutation (5 available); any Edil3 mutation (44 available)
Kdm6atm1c(EUCOMM)Wtsi mutation (1 available); any Kdm6a mutation (38 available)
phenotype observed in females
phenotype observed in males
N normal phenotype
mortality/aging
N
• males recovered at expected frequencies at E18.5




Genotype
MGI:8363224
cn4
Allelic
Composition
Kdm6atm1c(EUCOMM)Wtsi/Kdm6atm1c(EUCOMM)Wtsi
Pax3tm1(cre)Joe/Pax3+
Genetic
Background
involves: 129S1/Sv * 129X1/SvJ * C57BL/6J * C57BL/6N
Find Mice Using the International Mouse Strain Resource (IMSR)
Mouse lines carrying:
Kdm6atm1c(EUCOMM)Wtsi mutation (1 available); any Kdm6a mutation (38 available)
Pax3tm1(cre)Joe mutation (1 available); any Pax3 mutation (52 available)
phenotype observed in females
phenotype observed in males
N normal phenotype
mortality/aging
• females die at birth and cannot be recovered at weaning, due to deficiencies in lung inflation at birth

respiratory system
• lungs fail to inflate at birth




Genotype
MGI:8363223
cn5
Allelic
Composition
Kdm6atm1c(EUCOMM)Wtsi/Y
Pax3tm1(cre)Joe/Pax3+
Genetic
Background
involves: 129S1/Sv * 129X1/SvJ * C57BL/6J * C57BL/6N
Find Mice Using the International Mouse Strain Resource (IMSR)
Mouse lines carrying:
Kdm6atm1c(EUCOMM)Wtsi mutation (1 available); any Kdm6a mutation (38 available)
Pax3tm1(cre)Joe mutation (1 available); any Pax3 mutation (52 available)
phenotype observed in females
phenotype observed in males
N normal phenotype
craniofacial
• dome-shaped forehead
• enhanced frontonasal depression

growth/size/body
• dome-shaped forehead
• enhanced frontonasal depression

vision/eye
• narrow palpebral fissures




Genotype
MGI:7333177
cn6
Allelic
Composition
Kdm6atm1c(EUCOMM)Wtsi/Kdm6atm1c(EUCOMM)Wtsi
H2az2Tg(Wnt1-cre)11Rth/H2az2+
Genetic
Background
involves: C57BL/6J * C57BL/6N * CBA
Find Mice Using the International Mouse Strain Resource (IMSR)
Mouse lines carrying:
H2az2Tg(Wnt1-cre)11Rth mutation (2 available); any H2az2 mutation (25 available)
Kdm6atm1c(EUCOMM)Wtsi mutation (1 available); any Kdm6a mutation (38 available)
phenotype observed in females
phenotype observed in males
N normal phenotype
craniofacial
• partially penetrant
• in some cases the palatine bone fails to fuse at the midline

embryo
• neural crest cells in the supraorbital arch have a laterally shifted pattern of osteoblast and chondrocyte differentiation

digestive/alimentary system
• partially penetrant
• in some cases the palatine bone fails to fuse at the midline

nervous system
• neural crest cells in the supraorbital arch have a laterally shifted pattern of osteoblast and chondrocyte differentiation

growth/size/body
• partially penetrant
• in some cases the palatine bone fails to fuse at the midline




Genotype
MGI:7333176
cn7
Allelic
Composition
Kdm6atm1c(EUCOMM)Wtsi/Y
H2az2Tg(Wnt1-cre)11Rth/H2az2+
Genetic
Background
involves: C57BL/6J * C57BL/6N * CBA
Find Mice Using the International Mouse Strain Resource (IMSR)
Mouse lines carrying:
H2az2Tg(Wnt1-cre)11Rth mutation (2 available); any H2az2 mutation (25 available)
Kdm6atm1c(EUCOMM)Wtsi mutation (1 available); any Kdm6a mutation (38 available)
phenotype observed in females
phenotype observed in males
N normal phenotype
craniofacial
• partially penetrant
• in some cases the palatine bone fails to fuse at the midline

embryo
• neural crest cells in the supraorbital arch have a laterally shifted pattern of osteoblast and chondrocyte differentiation

digestive/alimentary system
• partially penetrant
• in some cases the palatine bone fails to fuse at the midline

nervous system
• neural crest cells in the supraorbital arch have a laterally shifted pattern of osteoblast and chondrocyte differentiation

growth/size/body
• partially penetrant
• in some cases the palatine bone fails to fuse at the midline




Genotype
MGI:8363222
cn8
Allelic
Composition
Kdm6atm1c(EUCOMM)Wtsi/Y
H2az2Tg(Wnt1-cre)11Rth/H2az2+
Genetic
Background
involves: C57BL/6J * C57BL/6N * CBA/J
Find Mice Using the International Mouse Strain Resource (IMSR)
Mouse lines carrying:
H2az2Tg(Wnt1-cre)11Rth mutation (2 available); any H2az2 mutation (25 available)
Kdm6atm1c(EUCOMM)Wtsi mutation (1 available); any Kdm6a mutation (38 available)
phenotype observed in females
phenotype observed in males
N normal phenotype
craniofacial
• mild craniofacial features
• males show increased facial angle producing a more prominent forehead
• alternations in facial angle are seen at E18.5
• males exhibit mildly depressed nasal tip
• frontonasal hypoplasia with depressed snout

growth/size/body
• males show increased facial angle producing a more prominent forehead
• alternations in facial angle are seen at E18.5
• males exhibit mildly depressed nasal tip
• frontonasal hypoplasia with depressed snout
• mice show reduction in weight starting at P3 that persists throughout adulthood

respiratory system
• males exhibit mildly depressed nasal tip

vision/eye
• males exhibit mildly reduced palpebral fissures




Genotype
MGI:7471469
cn9
Allelic
Composition
Kdm6atm1c(EUCOMM)Wtsi/Kdm6atm1c(EUCOMM)Wtsi
H2az2Tg(Wnt1-cre)11Rth/H2az2+
Genetic
Background
involves: C57BL/6J * C57BL/6N * CBA/J
Find Mice Using the International Mouse Strain Resource (IMSR)
Mouse lines carrying:
H2az2Tg(Wnt1-cre)11Rth mutation (2 available); any H2az2 mutation (25 available)
Kdm6atm1c(EUCOMM)Wtsi mutation (1 available); any Kdm6a mutation (38 available)
phenotype observed in females
phenotype observed in males
N normal phenotype
cardiovascular system
• patent ductus arteriosus congenital heart defects without abnormalities in ventricular septal closure

cellular
• patent ductus arteriosus congenital heart defects without abnormalities in ventricular septal closure

craniofacial
• craniofacial skeletal abnormalities manifest in embryonic development
• however, posterior cranial structures such as parietal bones derived from non-neural crest origins are unaffected
• mice show no deficiencies in cartilage distribution, but exhibit a persistence of mandibular cartilage
• females exhibit greater facial depression, a broader dome-shaped forehead
• alternations in facial angle are seen at E18.5
• dramatic shortening of frontal bones
• E18.5 cranial regions show decreased frontal bone thickness
• dramatic shortening of nasal bones
• however, gross bone composition is normal
• partially penetrant cleft palate
• mice show severely depressed nasal tip
• rounded low-set earlobes

digestive/alimentary system
• partially penetrant cleft palate

growth/size/body
• females exhibit greater facial depression, a broader dome-shaped forehead
• alternations in facial angle are seen at E18.5
• dramatic shortening of frontal bones
• E18.5 cranial regions show decreased frontal bone thickness
• dramatic shortening of nasal bones
• however, gross bone composition is normal
• partially penetrant cleft palate
• mice show severely depressed nasal tip
• rounded low-set earlobes
• mice show reduction in weight starting at P3 that persists throughout adulthood
• growth retardation is more severe than in males

hearing/vestibular/ear
• rounded low-set earlobes

mortality/aging
• approximately 40% die before weaning

respiratory system
• dramatic shortening of nasal bones
• however, gross bone composition is normal
• mice show severely depressed nasal tip

skeleton
• mice show no deficiencies in cartilage distribution, but exhibit a persistence of mandibular cartilage
• dramatic shortening of frontal bones
• E18.5 cranial regions show decreased frontal bone thickness
• dramatic shortening of nasal bones
• however, gross bone composition is normal

vision/eye
• severe palpebral fissure reduction

Mouse Models of Human Disease
DO ID OMIM ID(s) Ref(s)
Kabuki syndrome DOID:0060473 OMIM:147920
OMIM:300867
J:249358




Genotype
MGI:5516064
ot10
Allelic
Composition
Kdm6atm1c(EUCOMM)Wtsi/Y
Genetic
Background
either: (involves: C57BL/6 * CD-1) or (involves: 129 * C57BL/6 * CD-1)
Find Mice Using the International Mouse Strain Resource (IMSR)
Mouse lines carrying:
Kdm6atm1c(EUCOMM)Wtsi mutation (1 available); any Kdm6a mutation (38 available)
phenotype observed in females
phenotype observed in males
N normal phenotype
mortality/aging
• hemizygous males are reduced 55% from expected numbers
• numbers at E18.5 were as expected





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last database update
06/09/2026
MGI 6.24
The Jackson Laboratory