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Phenotypes associated with this allele
Allele Symbol
Allele Name
Allele ID
Eya1+
wild type
MGI:2158231
Summary 14 genotypes
Jump to Allelic Composition Genetic Background Genotype ID
ht1
Eya1tm1b(EUCOMM)Hmgu/Eya1+ C57BL/6N-Eya1tm1b(EUCOMM)Hmgu/Bay MGI:6288454
ht2
Eya1tm1Rilm/Eya1+ either: (involves: 129S1/Sv * 129X1/SvJ) or (involves: 129S1/Sv * 129X1/SvJ * BALB/c) MGI:3054666
ht3
Eya1tm1Rilm/Eya1+ involves: 129 * C3HeB/FeJ MGI:3812068
ht4
Eya1tm1Px/Eya1+ involves: 129S1/Sv * 129X1/SvJ MGI:3812061
ht5
Eya1tm1Rilm/Eya1+ involves: 129S1/Sv * 129X1/SvJ * C57BL/6J MGI:3054668
cx6
Eya1tm1Rilm/Eya1+
Tbx1tm1Bem/Tbx1+
involves: 129 * C57BL/6 * CD-1 * SJL MGI:5297336
cx7
Eya1tm1Rilm/Eya1+
Sumo1Gt(RRQ016)Byg/Sumo1+
involves: 129P2/OlaHsd * 129S1/Sv * 129X1/SvJ * C57BL/6J MGI:3712507
cx8
Eya1tm1Rilm/Eya1+
Six1tm1Rsd/Six1+
involves: 129S1/Sv * 129X1/SvJ MGI:2682362
cx9
Eya1tm1Rilm/Eya1+
Six1tm1Mair/Six1tm1Mair
involves: 129S1/Sv * 129X1/SvJ * C57BL/6 MGI:5297330
cx10
Eya1tm1Rilm/Eya1+
Pax2tm1Pgr/Pax2+
involves: 129S1/Sv * 129X1/SvJ * C57BL/6J MGI:3715118
cx11
Eya1tm1Rilm/Eya1+
Six1tm1Mair/Six1+
involves: 129/Sv * 129S1/Sv * 129X1/SvJ MGI:3054670
cx12
Eya1tm1Rilm/Eya1+
Six1tm1Mair/Six1+
involves: 129/Sv * 129S1/Sv * 129X1/SvJ * C57BL/6 MGI:3054671
cx13
Eya1tm1Rilm/Eya1+
Pax2tm1Pgr/Pax2+
Six1tm1Mair/Six1+
involves: 129/Sv * 129S1/Sv * 129X1/SvJ * C57BL/6J MGI:3715233
cx14
Eya1tm1Rilm/Eya1+
Six1tm1Mair/Six1+
involves: 129/Sv * 129S1/Sv * 129X1/SvJ * C57BL/6J MGI:3715225


Genotype
MGI:6288454
ht1
Allelic
Composition
Eya1tm1b(EUCOMM)Hmgu/Eya1+
Genetic
Background
C57BL/6N-Eya1tm1b(EUCOMM)Hmgu/Bay
Cell Lines HEPD0704_2_C05
Find Mice Using the International Mouse Strain Resource (IMSR)
Mouse lines carrying:
Eya1tm1b(EUCOMM)Hmgu mutation (0 available); any Eya1 mutation (57 available)
Data Sources
phenotype observed in females
phenotype observed in males
N normal phenotype
nervous system




Genotype
MGI:3054666
ht2
Allelic
Composition
Eya1tm1Rilm/Eya1+
Genetic
Background
either: (involves: 129S1/Sv * 129X1/SvJ) or (involves: 129S1/Sv * 129X1/SvJ * BALB/c)
Find Mice Using the International Mouse Strain Resource (IMSR)
Mouse lines carrying:
Eya1tm1Rilm mutation (1 available); any Eya1 mutation (57 available)
phenotype observed in females
phenotype observed in males
N normal phenotype
hearing/vestibular/ear
• morphological abnormalities of the ossicles are seen
• the stapes fails to contact the oval window because of abnormal VIIth cranial nerve placement
• abnormalities in the vestibular portion of the membranous labyrinth are seen
• hearing loss was variable from ear to ear in individual animals (one heterozygote had normal hearing in one ear and >70 dB loss in the other); 8 animals had a severe hearing loss (threshold shifted by >50 dB between 15 and 32 kHz), whereas only 2 showed normal hearing
• heterozygotes display some degree of hearing loss in at least one ear associated with abnormalities of the middle ear
• the stapes failed to contact the oval window because the VIIth cranial nerve passed abnormally between the stapes and the oval window or over the surface of the cochlea under the stapedial artery

renal/urinary system
• unilateral or bilateral kidney hypoplasia was seen in 2 out of 25 mutants

skeleton
• morphological abnormalities of the ossicles are seen
• the stapes fails to contact the oval window because of abnormal VIIth cranial nerve placement

nervous system
• atrophy of the spiral ganglion was seen in 2 out of 15 mutants
• the VIIth cranial nerve passes abnormally between the stapes and oval window or over the surface of the cochlea
• atrophy of the vestibulocochlear nerve was seen in 2 out of 15 mutants

craniofacial
• morphological abnormalities of the ossicles are seen
• the stapes fails to contact the oval window because of abnormal VIIth cranial nerve placement

Mouse Models of Human Disease
DO ID OMIM ID(s) Ref(s)
branchiootorenal syndrome DOID:14702 J:57313




Genotype
MGI:3812068
ht3
Allelic
Composition
Eya1tm1Rilm/Eya1+
Genetic
Background
involves: 129 * C3HeB/FeJ
Find Mice Using the International Mouse Strain Resource (IMSR)
Mouse lines carrying:
Eya1tm1Rilm mutation (1 available); any Eya1 mutation (57 available)
phenotype observed in females
phenotype observed in males
N normal phenotype
hearing/vestibular/ear
• there are slightly increased numbers of inner hair cells in the middle region of E18.5 embryos
• in the apex region, cochleae had many extra hair cells (nearly two rows of inner hair cells)
• adult mice exhibit short and disorganized stereocilia bundles
• some of the outer hair cell bundles are missing in the middle and apical regions
• nine of 22 mice show shortened or/and malformed cochlea at E18.5
• one ear retained only about one-half turn and another ear retained about three-quarter turn
• majority of the affected ears lost around one-half turn of the cochlea
• there is a slight but significant reduction in the number of hair cells found in the sacculle of mice (1508 vs. 1705 in wild-type)
• 2 mice of 22 mice at E18.5 have truncated posterior semicircular canals
• 2 of 22 mice at E18.5 have truncated ampulla, one posteriorly and one anteriorly
• 2 mice of 22 mice at E18.5 have truncated anterior semicircular canals
• 5 of 22 mice at E18.5 have malformed cochlea
• 4 mice of 22 mice at E18.5 have a truncated endolymphatic duct

nervous system
• there are slightly increased numbers of inner hair cells in the middle region of E18.5 embryos
• in the apex region, cochleae had many extra hair cells (nearly two rows of inner hair cells)
• adult mice exhibit short and disorganized stereocilia bundles
• some of the outer hair cell bundles are missing in the middle and apical regions
• there is a slight but significant reduction in the number of hair cells found in the sacculle of mice (1508 vs. 1705 in wild-type)




Genotype
MGI:3812061
ht4
Allelic
Composition
Eya1tm1Px/Eya1+
Genetic
Background
involves: 129S1/Sv * 129X1/SvJ
Find Mice Using the International Mouse Strain Resource (IMSR)
Mouse lines carrying:
Eya1tm1Px mutation (1 available); any Eya1 mutation (57 available)
phenotype observed in females
phenotype observed in males
N normal phenotype
normal phenotype




Genotype
MGI:3054668
ht5
Allelic
Composition
Eya1tm1Rilm/Eya1+
Genetic
Background
involves: 129S1/Sv * 129X1/SvJ * C57BL/6J
Find Mice Using the International Mouse Strain Resource (IMSR)
Mouse lines carrying:
Eya1tm1Rilm mutation (1 available); any Eya1 mutation (57 available)
phenotype observed in females
phenotype observed in males
N normal phenotype
renal/urinary system
• unilateral kidney agenesis was seen in 2 out of 11 mutants

hearing/vestibular/ear
• at E17.5, 17 of 20 heterozygous mutant inner ears (9 of 10 embryos) display a shortened cochlea with < 1.75 to ~1.5 turns, 3 of 20 (2 embryos) display < 1.5 to ~1.25 turns, and 1 innear ear (1 embryo) completes < 1.25 to ~1.0 turns; no less than 1.0 turns are observed
• at E17.5, 2 of 20 heterozygous mutant inner ears (2 of 10 embryos) display a truncated endolymphatic duct/sac

Mouse Models of Human Disease
DO ID OMIM ID(s) Ref(s)
branchiootorenal syndrome DOID:14702 J:57313




Genotype
MGI:5297336
cx6
Allelic
Composition
Eya1tm1Rilm/Eya1+
Tbx1tm1Bem/Tbx1+
Genetic
Background
involves: 129 * C57BL/6 * CD-1 * SJL
Find Mice Using the International Mouse Strain Resource (IMSR)
Mouse lines carrying:
Eya1tm1Rilm mutation (1 available); any Eya1 mutation (57 available)
Tbx1tm1Bem mutation (1 available); any Tbx1 mutation (36 available)
phenotype observed in females
phenotype observed in males
N normal phenotype

Cardiovascular defects in mice with mutations of one or both copies of Eya1tm1Rilm and Tbx1tm1Bem

cardiovascular system
• about 73% of embryos show cardiovascular defects at E17.5




Genotype
MGI:3712507
cx7
Allelic
Composition
Eya1tm1Rilm/Eya1+
Sumo1Gt(RRQ016)Byg/Sumo1+
Genetic
Background
involves: 129P2/OlaHsd * 129S1/Sv * 129X1/SvJ * C57BL/6J
Find Mice Using the International Mouse Strain Resource (IMSR)
Mouse lines carrying:
Eya1tm1Rilm mutation (1 available); any Eya1 mutation (57 available)
Sumo1Gt(RRQ016)Byg mutation (1 available); any Sumo1 mutation (67 available)
phenotype observed in females
phenotype observed in males
N normal phenotype
craniofacial
• cleft palate occurs with 36% frequency (4/11 heterozygotes) compared to 8.7% in Sumo1 single heterozygotes

digestive/alimentary system
• cleft palate occurs with 36% frequency (4/11 heterozygotes) compared to 8.7% in Sumo1 single heterozygotes

growth/size/body
• cleft palate occurs with 36% frequency (4/11 heterozygotes) compared to 8.7% in Sumo1 single heterozygotes




Genotype
MGI:2682362
cx8
Allelic
Composition
Eya1tm1Rilm/Eya1+
Six1tm1Rsd/Six1+
Genetic
Background
involves: 129S1/Sv * 129X1/SvJ
Find Mice Using the International Mouse Strain Resource (IMSR)
Mouse lines carrying:
Eya1tm1Rilm mutation (1 available); any Eya1 mutation (57 available)
Six1tm1Rsd mutation (0 available); any Six1 mutation (19 available)
phenotype observed in females
phenotype observed in males
N normal phenotype
renal/urinary system
• double heterozygotes display renal hypoplasia, not observed in single heterozygotes
• double heterozygotes often display unilateral kidney ablation




Genotype
MGI:5297330
cx9
Allelic
Composition
Eya1tm1Rilm/Eya1+
Six1tm1Mair/Six1tm1Mair
Genetic
Background
involves: 129S1/Sv * 129X1/SvJ * C57BL/6
Find Mice Using the International Mouse Strain Resource (IMSR)
Mouse lines carrying:
Eya1tm1Rilm mutation (1 available); any Eya1 mutation (57 available)
Six1tm1Mair mutation (0 available); any Six1 mutation (19 available)
phenotype observed in females
phenotype observed in males
N normal phenotype

Spectrum of abnormalities of great artery patterning in mice with null mutation of one or both copies of Six1tm1Mair and Eya1tm1Rilm

cardiovascular system
• observed in 20% of embryos
• type B observed in 33%
• 13% of embryos display duplicated left common carotid artery
• 87% of compound mutants display outflow tract defects
• observed in 13% of embryos




Genotype
MGI:3715118
cx10
Allelic
Composition
Eya1tm1Rilm/Eya1+
Pax2tm1Pgr/Pax2+
Genetic
Background
involves: 129S1/Sv * 129X1/SvJ * C57BL/6J
Find Mice Using the International Mouse Strain Resource (IMSR)
Mouse lines carrying:
Eya1tm1Rilm mutation (1 available); any Eya1 mutation (57 available)
Pax2tm1Pgr mutation (1 available); any Pax2 mutation (47 available)
phenotype observed in females
phenotype observed in males
N normal phenotype
hearing/vestibular/ear
• at E17.5, 4 of 24 double heterozygous mutant inner ears (2 of 12 embryos) display a malformed cochlea with enlarged and mal-shaped distal tips
• at E17.5, 6 of 24 double heterozygous mutant cochleae (4 of 12 embryos) only reach 1 and 1.25 turns while 12 of 24 cochleae (8 of 12 embryos) coil between 1.5 and 1.75 turns
• at E17.5, 5 of 24 double heterozygous mutant inner ears (3 of 12 embryos) display a small lateral semicircular canal
• at E17.5, 2 of 24 double heterozygous mutant inner ears (1 of 12 embryos) show absence of the posterior ampullae and truncation of the posterior semicircular canals
• at E17.5, 5 of 24 double heterozygous mutant inner ears (3 of 12 embryos) display a small posterior semicircular canal
• at E17.5, 18 of 24 double heterozygous mutant inner ears (10 of 12 embryos) display significantly smaller or morphologically unidentifiable ampullae
• at E17.5, 5 of 24 double heterozygous mutant inner ears (3 of 12 embryos) display a small anterior semicircular canal
• at E17.5, 18 of 24 double heterozygous mutant inner ears (10 of 12 embryos) display smaller or malshaped sacculae
• at E17.5, 2 of 24 double heterozygous mutant inner ears (2 of 12 embryos) display a truncated endolymphatic duct/sac




Genotype
MGI:3054670
cx11
Allelic
Composition
Eya1tm1Rilm/Eya1+
Six1tm1Mair/Six1+
Genetic
Background
involves: 129/Sv * 129S1/Sv * 129X1/SvJ
Find Mice Using the International Mouse Strain Resource (IMSR)
Mouse lines carrying:
Eya1tm1Rilm mutation (1 available); any Eya1 mutation (57 available)
Six1tm1Mair mutation (0 available); any Six1 mutation (19 available)
phenotype observed in females
phenotype observed in males
N normal phenotype
renal/urinary system
• unilateral (6/21) or bilateral (9/21) kidney hypoplasia was seen on a 129 background
• Background Sensitivity: hypoplasia is more severe on a 129 background than on a C57BL/6 background
• bilateral (5/21) kidney agenesis was seen on a 129 background
• unilateral (1/21) kidney agenesis was seen on a 129 background
• the number of ureteric bud branches are decreased at E13.5




Genotype
MGI:3054671
cx12
Allelic
Composition
Eya1tm1Rilm/Eya1+
Six1tm1Mair/Six1+
Genetic
Background
involves: 129/Sv * 129S1/Sv * 129X1/SvJ * C57BL/6
Find Mice Using the International Mouse Strain Resource (IMSR)
Mouse lines carrying:
Eya1tm1Rilm mutation (1 available); any Eya1 mutation (57 available)
Six1tm1Mair mutation (0 available); any Six1 mutation (19 available)
phenotype observed in females
phenotype observed in males
N normal phenotype
renal/urinary system
• unilateral (6/14) or bilateral (4/14) kidney hypoplasia was seen on a C57BL/6 background
• Background Sensitivity: hypoplasia is more severe on a 129 background than on a C57BL/6 background
• unilateral (4/10) kidney agenesis was seen on a C57BL/6 background
• the number of ureteric bud branches is decreased at E13.5




Genotype
MGI:3715233
cx13
Allelic
Composition
Eya1tm1Rilm/Eya1+
Pax2tm1Pgr/Pax2+
Six1tm1Mair/Six1+
Genetic
Background
involves: 129/Sv * 129S1/Sv * 129X1/SvJ * C57BL/6J
Find Mice Using the International Mouse Strain Resource (IMSR)
Mouse lines carrying:
Eya1tm1Rilm mutation (1 available); any Eya1 mutation (57 available)
Pax2tm1Pgr mutation (1 available); any Pax2 mutation (47 available)
Six1tm1Mair mutation (0 available); any Six1 mutation (19 available)
phenotype observed in females
phenotype observed in males
N normal phenotype
hearing/vestibular/ear
• at E17.5, 8 of 8 triple heterozygous mutant inner ears (from all 4 embryos) display a severely malformed cochlea with severely malformed distal tips
• at E17.5, 1 of 8 triple heterozygous mutant cochleae (1 of 4 embryos) coil between 1.0 and 1.25 turns, and 7 of 8 cochleae (4 of 4 embryos) coil less than 1.0 turn
• within the semicircular canals, a narrower lumen is observed in some areas
• at E17.5, 8 of 8 triple heterozygous mutant inner ears (from all 4 embryos) display a small lateral semicircular canal
• at E17.5, 4 of 8 triple heterozygous mutant inner ears (3 of 4 embryos) display a small posterior semicircular canal while 4 of 8 (3 of 4 embryos) show a truncated posterior semicircular canal
• at E17.5, 4 of 8 triple heterozygous mutant inner ears (3 of 4 embryos) display significantly smaller posterior ampullae while 4 of 8 ears (3 of 4 embryos) lack posterior ampullae
• at E17.5, 4 of 8 triple heterozygous mutant inner ears (from all 4 embryos) display significantly smaller anterior ampullae
• at E17.5, 4 of 8 triple heterozygous mutant inner ears (from all 4 embryos) display significantly smaller lateral ampullae
• at E17.5, 8 of 8 triple heterozygous mutant inner ears (from all 4 embryos) display a small anterior semicircular canal
• at E17.5, 8 of 8 triple heterozygous mutant inner ears (from all 4 embryos) display a small or malformed saccula
• at E17.5, 2 of 8 triple heterozygous mutant inner ears (1 of 4 embryos) display a truncated endolymphatic duct/sac




Genotype
MGI:3715225
cx14
Allelic
Composition
Eya1tm1Rilm/Eya1+
Six1tm1Mair/Six1+
Genetic
Background
involves: 129/Sv * 129S1/Sv * 129X1/SvJ * C57BL/6J
Find Mice Using the International Mouse Strain Resource (IMSR)
Mouse lines carrying:
Eya1tm1Rilm mutation (1 available); any Eya1 mutation (57 available)
Six1tm1Mair mutation (0 available); any Six1 mutation (19 available)
phenotype observed in females
phenotype observed in males
N normal phenotype
hearing/vestibular/ear
• at E17.5, double heterozygotes display an enhanced inner ear phenotype relative to each single heterozygous mutant animal
• at E17.5, 4 of 20 double heterozygous mutant inner ears (4 of 10 embryos) display a malformed cochlea
• at E17.5, 6 of 20 double heterozygous mutant cochleae (4 of 10 embryos) coil between 1.5 to 1.75 turns, 4 of 20 cochleae (3 of 10 embryos) coil between 1.25 and 1.5 turns, 5 of 20 cochlea (4 of 10 embryos) coil between 1.0 and 1.25 turns, and 4 of 20 cochleae (3 of 10 embryos) coil less than 1.0 turn
• at E17.5, 2 of 20 double heterozygous mutant inner ears (1 of 10 embryos) display a small lateral semicircular canal
• at E17.5, 2 of 20 double heterozygous mutant inner ears (1 of 10 embryos) display a truncated posterior semicircular canal
• at E17.5, 9 of 20 double heterozygous mutant inner ears (5 of 10 embryos) display significantly smaller posterior ampullae while 2 of 20 (1 of 10 embryos) lack posterior ampullae
• at E17.5, 11 of 20 double heterozygous mutant inner ears (6 of 10 embryos) display significantly smaller anterior ampullae
• at E17.5, 11 of 20 double heterozygous mutant inner ears (6 of 10 embryos) display significantly smaller lateral ampullae
• at E17.5, 2 of 20 double heterozygous mutant inner ears (1 of 10 embryos) display a small anterior semicircular canal
• at E17.5, 2 of 20 double heterozygous mutant inner ears (1 of 10 embryos) display smaller or malshaped sacculae
• at E17.5, 3 of 20 double heterozygous mutant inner ears (2 of 10 embryos) display a truncated endolymphatic duct/sac





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last database update
01/20/2026
MGI 6.24
The Jackson Laboratory