Bmncr MGI Mouse Gene Detail - MGI:5590788 - bone marrow associated noncoding RNA

Sequence Map

Chr1:133905026-133934187 bp, + strand
From NCBI annotation of GRCm39
View this region in JBrowse
Genome Browsers

Ensembl | UCSC | NCBI

For selected strains:

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5590788	lncRNA gene	Chr1:133889480-133943069 (+)
129S1/SvImJ	ENSMUSG00200009205	lncRNA gene	Chr1:131509407-131522513 (+)
A/J	ENSMUSG00195044486	lncRNA gene	Chr1:130583882-130596989 (+)
AKR/J	ENSMUSG00220050250	lncRNA gene	Chr1:130453374-130466485 (+)
BALB/cJ	ENSMUSG00180039320	lncRNA gene	Chr1:131132007-131145116 (+)
C3H/HeJ	ENSMUSG00175046776	lncRNA gene	Chr1:130828190-130841295 (+)
C57BL/6NJ	ENSMUSG00215045691	lncRNA gene	Chr1:130833668-130846776 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005039022	lncRNA gene	Chr1:129748800-129761975 (+)
CBA/J	ENSMUSG00210028524	lncRNA gene	Chr1:130748748-130761858 (+)
DBA/2J	ENSMUSG00185034875	lncRNA gene	Chr1:135120146-135133256 (+)
FVB/NJ	ENSMUSG00205044310	lncRNA gene	Chr1:130085402-130098515 (+)
JF1/MsJ	ENSUMUG00000053053	lncRNA gene	Chr1:134272582-134285691 (+)
LP/J	ENSMUSG00230039465	lncRNA gene	Chr1:134666917-134680024 (+)
NOD/ShiLtJ	ENSMUSG00190048007	lncRNA gene	Chr1:130762924-130776033 (+)
NZO/HlLtJ	ENSMUSG00225021817	lncRNA gene	Chr1:138419837-138432945 (+)
PWK/PhJ	ENSLUMG00010028586	lncRNA gene	Chr1:129902640-129915939 (+)
SPRET/EiJ	ENSMSPG00010045226	lncRNA gene	Chr1:132691845-132708458 (+)
WSB/EiJ	ENSIUOG00005048165	lncRNA gene	Chr1:130502385-130515494 (+)

Vertebrate Orthology Source

Alliance of Genome Resources

less

Phenotype Summary

7 phenotypes from 1 allele in 1 genetic background
8 phenotype references

Phenotype Overview

Blue squares indicate phenotypes directly attributed to mutations/alleles of this gene.

adipose tissue	behavior/neurological	cardiovascular system	cellular	craniofacial	digestive/alimentary system	embryo	endocrine/exocrine glands	growth/size/body	hearing/vestibular/ear	hematopoietic system	homeostasis/metabolism	integument	immune system	limbs/digits/tail	liver/biliary system	mortality/aging	muscle	nervous system	pigmentation	renal/urinary system	reproductive system	respiratory system	skeleton	taste/olfaction	neoplasm	vision/eye

Click cells to view annotations.

Mice homozygous for a knock-out allele exhibit accelerated age-associated bone loss and increased bone marrow adiposity.

less

Representative Sequences				Length	Strain/Species	Flank
	genomic	102633923	NCBI Gene Model \| MGI Sequence Detail	29162	C57BL/6J	± kb
	transcript	NR_202116	RefSeq \| MGI Sequence Detail	4220	C57BL/6

less

MGI:6280441

Summaries

All 11

Phenotypes 8
Earliest

J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
Latest

J:358238 Guo YF, et al., lncRNA Hnscr Regulates Lipid Metabolism by Mediating Adipocyte Lipolysis. Endocrinology. 2023 Nov 2;164(12)

TSS for Bmncr:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr8828	Chr1:133905217-133905228 (+)	197 bp

Contributing Projects: Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources Funding Information Warranty Disclaimer, Privacy Notice, Licensing, & Copyright Send questions and comments to User Support.	last database update 09/08/2026 MGI 6.24