Gm26871 MGI Mouse Gene Detail - MGI:5477365

Symbol

Gm26871
Name

predicted gene, 26871

Feature Type

lncRNA gene
IDs

MGI:5477365
NCBI Gene: 102634933
Alliance

gene page
Transcription Start Sites

8 TSS

Sequence Map

Chr3:118223745-118328662 bp, + strand
From Ensembl annotation of GRCm39
View this region in JBrowse
Genome Browsers

Ensembl | UCSC | NCBI

Genetic Map

Chromosome 3, Syntenic
Mapping Data

1 experiment

SNPs within 2kb

3341 from dbSNP Build 142
Strain Annotations

18

For selected strains:

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5477365	lncRNA gene	Chr3:118223583-118337636 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0015521	unclassified non-coding RNA gene	Chr3:120454917-120565799 (+)
A/J	MGP_AJ_G0015498	unclassified non-coding RNA gene	Chr3:116500120-116601931 (+)
AKR/J	MGP_AKRJ_G0015462	unclassified non-coding RNA gene	Chr3:119426349-119531808 (+)
BALB/cJ	MGP_BALBcJ_G0015460	unclassified non-coding RNA gene	Chr3:116323283-116426079 (+)
C3H/HeJ	MGP_C3HHeJ_G0015283	unclassified non-coding RNA gene	Chr3:119840131-119949426 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0015914	unclassified non-coding RNA gene	Chr3:124839344-124953937 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013649	unclassified non-coding RNA gene	Chr3:112065803-112165041 (+)
CAST/EiJ	MGP_CASTEiJ_G0014837	unclassified non-coding RNA gene	Chr3:119155513-119263738 (+)
CBA/J	MGP_CBAJ_G0015264	unclassified non-coding RNA gene	Chr3:129140018-129239873 (+)
DBA/2J	MGP_DBA2J_G0015358	unclassified non-coding RNA gene	Chr3:115692994-115793685 (+)
FVB/NJ	MGP_FVBNJ_G0015365	unclassified non-coding RNA gene	Chr3:113311985-113412955 (+)
LP/J	MGP_LPJ_G0015437	unclassified non-coding RNA gene	Chr3:122015890-122125575 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0015389	unclassified non-coding RNA gene	Chr3:136592037-136731711 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0015955	unclassified non-coding RNA gene	Chr3:118982307-119089762 (+)
PWK/PhJ	MGP_PWKPhJ_G0014623	unclassified non-coding RNA gene	Chr3:115334632-115435694 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0014411	unclassified non-coding RNA gene	Chr3:117036279-117137233 (+)
WSB/EiJ	MGP_WSBEiJ_G0014943	unclassified non-coding RNA gene	Chr3:119695670-119809692 (+)

Human Ortholog

MIR137HG, MIR137 host gene

Vertebrate Orthologs

1

Vertebrate Orthology Source

Alliance of Genome Resources

Human Ortholog

MIR137HG, MIR137 host gene
Links

HGNC:42871

NCBI Gene ID: 400765
Chr Location

1p21.3; chr1:97933474-98054717 (-) GRCh38

MGI Vertebrate Homology

Gm26871 stringent orthology
1 human;1 mouse
HCOP

vertebrate homology predictions: MIR137HG
Gene Tree

Gm26871

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References

1 with disease annotations

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Phenotype Summary

4 phenotype references

All Mutations and Alleles

2
Chemically induced (other)

1
Radiation induced

1
Genomic Mutations

2 involving Gm26871
Find Mice (IMSR)

0 strains or lines available

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Expression Overview

GXD's primary emphasis is on endogenous gene expression during development. Click on grid cells to view annotations.

Blue cells = expressed in wild-type.
Gray triangles = other expression annotations only
(e.g. absence of expression or data from mutants).

early conceptus	embryo ectoderm	embryo endoderm	embryo mesoderm	embryo mesenchyme	extraembryonic component	alimentary system	auditory system	branchial arches	cardiovascular system	connective tissue	endocrine system	exocrine system	hemolymphoid system	integumental system	limbs	liver and biliary system	musculoskeletal system	nervous system	olfactory system	reproductive system	respiratory system	urinary system	visual system

Click cells to view annotations.

Assay Results

706
cDNA Data

2

Tissue x Stage Matrix

Other Mouse Links

GEO

Expression Atlas

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All Sequences

66
RefSeq

13

Ensembl

ENSMUSG00000097311 (Evidence)
NCBI Gene

102634933

Representative Sequences				Length	Strain/Species	Flank
	genomic	ENSMUSG00000097311	Ensembl Gene Model \| MGI Sequence Detail	104918	C57BL/6J	± kb
	transcript	ENSMUST00000193265	Ensembl \| MGI Sequence Detail	4131	Not Applicable

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All nucleic 2

cDNA 2

Summaries

All 8

Diseases 1

Phenotypes 4
Earliest

J:70677 Cook SA, et al., Mouse paracentric inversion In(3)55Rk mutates the urate oxidase gene. Cytogenet Cell Genet. 2001;93(1-2):77-82
Latest

J:302829 Lu J, et al., Mouse models for human hyperuricaemia: a critical review. Nat Rev Rheumatol. 2019 Jul;15(7):413-426

TSS for Gm26871:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr31405	Chr3:118223690-118223723 (+)	-38 bp
Tssr31406	Chr3:118223948-118224017 (+)	238 bp
Tssr31407	Chr3:118224065-118224126 (+)	351 bp
Tssr31408	Chr3:118225068-118225114 (+)	1,346 bp
Tssr31409	Chr3:118225142-118225168 (+)	1,410 bp
Tssr31410	Chr3:118225175-118225187 (+)	1,436 bp
Tssr31412	Chr3:118249968-118249974 (+)	26,226 bp
Tssr31413	Chr3:118315684-118315688 (+)	91,941 bp

Contributing Projects: Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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