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Traj40 Gene Detail
Summary
  • Symbol
    Traj40
  • Name
    T cell receptor alpha joining 40
  • Synonyms
    Gm16668
Location &
Maps
more
  • Sequence Map
    Chr14:54415378-54415438 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 14, 27.68 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    38 from dbSNP Build 142
  • Strain Annotations
    19
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_4439592
 gene segment Chr14:54415378-54415438 (+)
129S1/SvImJ ENSMUSG00200045252
 gene segment Chr14:43007653-43007713 (+)
A/J ENSMUSG00195037148
 gene segment Chr14:43231921-43231981 (+)
AKR/J ENSMUSG00220035880
 gene segment Chr14:42559855-42559915 (+)
BALB/cJ ENSMUSG00180053188
 gene segment Chr14:42855690-42855750 (+)
C3H/HeJ ENSMUSG00175052203
 gene segment Chr14:44538132-44538192 (+)
C57BL/6NJ ENSMUSG00215049303
 gene segment Chr14:42737674-42737734 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0002145
 gene segment Chr14:45610948-45611008 (+)
CAST/EiJ ENSTCUG00005050226
 gene segment Chr14:44534370-44534430 (+)
CBA/J ENSMUSG00210046642
 gene segment Chr14:43218691-43218751 (+)
DBA/2J ENSMUSG00185056249
 gene segment Chr14:48259343-48259403 (+)
FVB/NJ ENSMUSG00205047324
 gene segment Chr14:42601608-42601668 (+)
JF1/MsJ ENSUMUG00000054687
 gene segment Chr14:59517904-59517964 (+)
LP/J ENSMUSG00230052872
 gene segment Chr14:60373648-60373708 (+)
NOD/ShiLtJ ENSMUSG00190048275
 gene segment Chr14:42962425-42962485 (+)
NZO/HlLtJ ENSMUSG00225051555
 gene segment Chr14:50671738-50671798 (+)
PWK/PhJ ENSLUMG00010051798
 gene segment Chr14:42441749-42441809 (+)
SPRET/EiJ ENSMSPG00010049080
 gene segment Chr14:45832407-45832467 (+)
WSB/EiJ ENSIUOG00005046916
 gene segment Chr14:42433429-42433489 (+)



Homology
more
  • Human Ortholog
    TRAJ40, T cell receptor alpha joining 40
  • Vertebrate Orthologs
    1
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    TRAJ40, T cell receptor alpha joining 40
  • Links
    NCBI Gene ID: 28715

  • Chr Location
    14q11.2; chr14:22499689-22499749 (+)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    2 phenotype references
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    597
Sequences &
Gene Models
less
  • All Sequences
    25
  • RefSeq
    1
  • UniProt
    1
Representative SequencesLengthStrain/SpeciesFlank
genomic 100124348 NCBI Gene Model | MGI Sequence Detail 61 C57BL/6J ±  kb
polypeptide A0A0G2JH15 UniProt | EBI | MGI Sequence Detail 20 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    1 Sequence
References
more
  • Summaries
    All 18
    Phenotypes 2
  • Earliest
    J:7626 Chien Y, et al., A third type of murine T-cell receptor gene. Nature. 1984 Nov 1-7;312(5989):31-5
  • Latest
    J:164272 Giudicelli V, et al., IMGT/GENE-DB: a comprehensive database for human and mouse immunoglobulin and T cell receptor genes. Nucleic Acids Res. 2005 Jan 1;33(Database issue):D256-61
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
09/08/2026
MGI 6.24 		The Jackson Laboratory