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Cfap47 Gene Detail
Summary
  • Symbol
    Cfap47
  • Name
    cilia and flagella associated protein 47
  • Synonyms
    Chdc2, Gm16462, Gm3297, Gm7173, Gm8787
  • Feature Type
    protein coding gene
  • IDs
    MGI:3781475
    NCBI Gene: 636104
  • Alliance
    genome feature page
  • Transcription Start Sites
    1 TSS
Location &
Maps
more
  • Sequence Map
    ChrX:78310165-78560891 bp, - strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome X, 38.37 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    4777 from dbSNP Build 142
  • Strain Annotations
    19
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3781475
 protein coding gene ChrX:78310164-78560957 (-)
129S1/SvImJ ENSMUSG00200040663
 protein coding gene ChrX:60279016-60531201 (-)
A/J ENSMUSG00195041091
 protein coding gene ChrX:64036606-64288684 (-)
AKR/J ENSMUSG00220041908
 protein coding gene ChrX:59147964-59400050 (-)
BALB/cJ ENSMUSG00180049730
 protein coding gene ChrX:60610369-60862523 (-)
C3H/HeJ ENSMUSG00175029695
 protein coding gene ChrX:64188504-64440571 (-)
C57BL/6NJ ENSMUSG00215039195
 protein coding gene ChrX:60714671-60966854 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0033209
 protein coding gene ChrX:74797883-75036052 (-)
CAST/EiJ ENSTCUG00005037816
 protein coding gene ChrX:61934513-62193049 (-)
CBA/J ENSMUSG00210025392
 protein coding gene ChrX:60883543-61135629 (-)
DBA/2J ENSMUSG00185037446
 protein coding gene ChrX:73290407-73542487 (-)
FVB/NJ ENSMUSG00205022939
 protein coding gene ChrX:60204330-60456393 (-)
JF1/MsJ ENSUMUG00000024193
 protein coding gene ChrX:94060989-94320517 (-)
LP/J ENSMUSG00230031176
 protein coding gene ChrX:79903259-80155371 (-)
NOD/ShiLtJ ENSMUSG00190027940
 protein coding gene ChrX:60169390-60421558 (-)
NZO/HlLtJ ENSMUSG00225047316
 protein coding gene ChrX:85073491-85324688 (-)
PWK/PhJ ENSLUMG00010044377
 protein coding gene ChrX:59747638-60000319 (-)
SPRET/EiJ ENSMSPG00010022500
 protein coding gene ChrX:63377411-63639283 (-)
WSB/EiJ ENSIUOG00005041351
 protein coding gene ChrX:60829471-61081129 (-)



Homology
more
  • Human Ortholog
    CFAP47, cilia and flagella associated protein 47
  • Vertebrate Orthologs
    2
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    CFAP47, cilia and flagella associated protein 47
  • Synonyms
    CHDC2, CXorf22, CXorf30, CXorf59, SPGF52, SPGFX3
  • Links
    NCBI Gene ID: 286464
    UniProt: Q6ZTR5

  • Chr Location
    Xp21.1; chrX:35919734-36385317 (+)  GRCh38
Human Diseases
more
  • Diseases
    1 with Cfap47 mouse models; 1 with human CFAP47 associations

Human Disease Mouse Models
      
IDs
 View 1 model
      
IDs
Click on a disease name to see all genes associated with that disease.

  • Mutations/Alleles
    1 with disease annotations
  • References
    1 with disease annotations
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    10 phenotypes from 2 alleles in 2 genetic backgrounds
    8 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
integument
immune system
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
neoplasm
vision/eye

Click cells to view annotations.
Homozygous knockout leads to male infertility owing to impaired sperm motility.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    8
  • GO References
    3
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    597
  • cDNA Data
    2
  • Comparison Matrix
    Gene Expression + Phenotype
    • Sequences &
    Gene Models
    less
    Representative SequencesLengthStrain/SpeciesFlank
    genomic ENSMUSG00000073077 Ensembl Gene Model | MGI Sequence Detail 250727 C57BL/6J ±  kb
    transcript ENSMUST00000197180 Ensembl | MGI Sequence Detail 9568 Not Applicable  
    polypeptide ENSMUSP00000142707 Ensembl | MGI Sequence Detail 3184 Not Applicable  
    For the selected sequence
    Protein
    Information
    less
    Molecular
    Reagents
    less
    • All nucleic 2
      cDNA 2

      Microarray probesets 2
    Other
    Accession IDs
    less
    MGI:3642993, MGI:3643055, MGI:3645063
    References
    more
    • Summaries
      All 24
      Diseases 1
      Gene Ontology 3
      Phenotypes 8
    • Earliest
      J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42
    • Latest
      J:345524 Liao HQ, et al., WDR87 interacts with CFAP47 protein in the middle piece of spermatozoa flagella to participate in sperm tail assembly. Mol Hum Reprod. 2022 Dec 28;29(1)
    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
    Citing These Resources
    Funding Information
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    Send questions and comments to User Support.     		last database update
    09/08/2026
    MGI 6.24     		The Jackson Laboratory