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Lncenc1 Gene Detail
Summary
  • Symbol
    Lncenc1
  • Name
    long non-coding RNA, embryonic stem cells expressed 1
  • Synonyms
    Gm11019, Gm2373, linc-Enc1, Lincenc1, Platr18
Location &
Maps
more
  • Sequence Map
    Chr13:97571441-97641366 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 13, 50.71 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    2309 from dbSNP Build 142
  • Strain Annotations
    19
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3780541
 lncRNA gene Chr13:97571441-97652188 (+)
129S1/SvImJ ENSMUSG00200009811
 lncRNA gene Chr13:92101172-92175752 (+)
A/J ENSMUSG00195029701
 lncRNA gene Chr13:92608235-92682142 (+)
AKR/J ENSMUSG00220028949
 lncRNA gene Chr13:91058383-91132296 (+)
BALB/cJ ENSMUSG00180038345
 lncRNA gene Chr13:93123598-93198163 (+)
C3H/HeJ ENSMUSG00175017898
 lncRNA gene Chr13:93297700-93372260 (+)
C57BL/6NJ ENSMUSG00215033184
 lncRNA gene Chr13:93175331-93249307 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0004992
 lincRNA gene Chr13:91057805-91119394 (+)
CAST/EiJ ENSTCUG00005011839
 lncRNA gene Chr13:92400630-92482352 (+)
CBA/J ENSMUSG00210012059
 lncRNA gene Chr13:92620095-92693995 (+)
DBA/2J ENSMUSG00185020320
 lncRNA gene Chr13:96280814-96354731 (+)
FVB/NJ ENSMUSG00205032536
 lncRNA gene Chr13:92085332-92159911 (+)
JF1/MsJ ENSUMUG00000032244
 lncRNA gene Chr13:95967382-96041472 (+)
LP/J ENSMUSG00230037509
 lncRNA gene Chr13:106285832-106360372 (+)
NOD/ShiLtJ ENSMUSG00190040922
 lncRNA gene Chr13:92955975-93029933 (+)
NZO/HlLtJ ENSMUSG00225033757
 lncRNA gene Chr13:98810993-98885544 (+)
PWK/PhJ ENSLUMG00010025696
 lncRNA gene Chr13:92059359-92133174 (+)
SPRET/EiJ ENSMSPG00010009120
 lncRNA gene Chr13:93332012-93405808 (+)
WSB/EiJ ENSIUOG00005034937
 lncRNA gene Chr13:91983279-92057870 (+)



Homology
more
  • Human Ortholog
    LINC01157, long independently transcribed non-coding RNA 1157
  • Vertebrate Orthologs
    1
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    LINC01157, long independently transcribed non-coding RNA 1157
  • Synonyms
    linc-Enc1, Lncenc1
  • Links
    NCBI Gene ID: 105379037

  • Chr Location
    chr5:74258785-74321276 (-)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    24 phenotypes from 3 alleles in 3 genetic backgrounds
    15 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
integument
immune system
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
neoplasm
vision/eye

Click cells to view annotations.
Mice homozygous for a null allele exhibit glucose intolerance and insulin resistance when fed standard chow but improved glucose tolerance and insulin sensitivity when fed a high-fat diet.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    611
  • Tissues
    14
  • cDNA Data
    14
  • Literature Summary
    3
  • Comparison Matrix
    Gene Expression + Phenotype
    • Sequences &
    Gene Models
    less
    • All Sequences
      47
    • RefSeq
      6
    Representative SequencesLengthStrain/SpeciesFlank
    genomic 100039691 NCBI Gene Model | MGI Sequence Detail 69926 C57BL/6J ±  kb
    transcript NR_188726 RefSeq | MGI Sequence Detail 3338 C57BL/6  
    For the selected sequence
    Molecular
    Reagents
    less
    • All nucleic 14
      cDNA 14
    Other
    Accession IDs
    less
    MGI:3779239
    References
    more
    • Summaries
      All 24
      Developmental Gene Expression 3
      Phenotypes 15
    • Earliest
      J:93290 Araki K, et al., Exchangeable gene trap using the Cre/mutated lox system. Cell Mol Biol (Noisy-Le-Grand). 1999 Jul;45(5):737-50
    • Latest
      J:339418 Han Y, et al., A proinflammatory long noncoding RNA Lncenc1 regulates inflammasome activation in macrophage. Am J Physiol Lung Cell Mol Physiol. 2023 May 1;324(5):L584-L595
    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
    Citing These Resources
    Funding Information
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    Send questions and comments to User Support.     		last database update
    09/08/2026
    MGI 6.24     		The Jackson Laboratory