Rpl35rt MGI Mouse Gene Detail - MGI:3780170 - ribosomal protein L35, retrotransposed

Sequence Map

Chr1:156193610-156194054 bp, + strand
From NCBI annotation of GRCm39
View this region in JBrowse
Genome Browsers

Ensembl | UCSC | NCBI

For selected strains:

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3780170	protein coding gene	Chr1:156193610-156194054 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0034263	protein coding gene	Chr8:127490676-127491118 (+)
A/J	MGP_AJ_G0034243	protein coding gene	Chr8:122233430-122233872 (+)
AKR/J	MGP_AKRJ_G0034170	protein coding gene	Chr8:125746757-125747323 (+)
BALB/cJ	MGP_BALBcJ_G0034236	protein coding gene	Chr8:122419711-122420153 (+)
C3H/HeJ	MGP_C3HHeJ_G0033947	protein coding gene	Chr8:126384664-126385106 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0034756	protein coding gene	Chr8:131771458-131771900 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	MGP_CBAJ_G0033920	protein coding gene	Chr8:136584204-136584646 (+)
DBA/2J	MGP_DBA2J_G0034076	protein coding gene	Chr8:121388781-121389223 (+)
FVB/NJ	MGP_FVBNJ_G0034020	protein coding gene	Chr8:120549921-120550363 (+)
LP/J	no annotation
NOD/ShiLtJ	MGP_NODShiLtJ_G0034067	protein coding gene	Chr8:138723413-138723855 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0034775	protein coding gene	Chr8:125978019-125978461 (+)
PWK/PhJ	MGP_PWKPhJ_G0032976	protein coding gene	Chr8:121142812-121143742 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0020959	protein coding gene	Chr15:81484689-81485133 (-)
WSB/EiJ	MGP_WSBEiJ_G0033391	protein coding gene	Chr8:126706704-126707098 (+)

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Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.

Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.

Cellular Component

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Expression Overview

GXD's primary emphasis is on endogenous gene expression during development. Click on grid cells to view annotations.

Blue cells = expressed in wild-type.
Gray triangles = other expression annotations only
(e.g. absence of expression or data from mutants).

early conceptus	embryo ectoderm	embryo endoderm	embryo mesoderm	embryo mesenchyme	extraembryonic component	alimentary system	auditory system	branchial arches	cardiovascular system	connective tissue	endocrine system	exocrine system	hemolymphoid system	integumental system	limbs	liver and biliary system	musculoskeletal system	nervous system	olfactory system	reproductive system	respiratory system	urinary system	visual system

Click cells to view annotations.

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Representative Sequences				Length	Strain/Species	Flank
	genomic	100038991	NCBI Gene Model \| MGI Sequence Detail	445	C57BL/6J	± kb
	polypeptide	Q6ZWV7	UniProt \| EBI \| MGI Sequence Detail	123	Not Applicable

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MGI:7481996

Summaries

All 8

Phenotypes 2
Earliest

J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
Latest

J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Rpl35rt:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr9563	Chr1:156193607-156193614 (+)	1 bp

Contributing Projects: Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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