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Ly6c2 Gene Detail
Summary
  • Symbol
    Ly6c2
  • Name
    lymphocyte antigen 6 family memberC2
Location &
Maps
more
  • Sequence Map
    Chr15:74980010-74983820 bp, - strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 15, 34.29 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    234 from dbSNP Build 142
  • Strain Annotations
    19
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3712069
 protein coding gene Chr15:74980007-74983820 (-)
129S1/SvImJ ENSMUSG00200049316
 protein coding gene Chr15:72089202-72093010 (-)
A/J ENSMUSGG00195055513
 protein coding gene Chr15:72082442-72087012 (-)
AKR/J ENSMUSG00220045736
 protein coding gene Chr15:72077647-72081459 (-)
BALB/cJ ENSMUSGG00180054993
 protein coding gene Chr15:71854942-71859474 (-)
BALB/cJ ENSMUSG00180046308
 protein coding gene Chr15:71919417-71922922 (-)
C3H/HeJ ENSMUSGG00175055154
 protein coding gene Chr15:72216864-72221396 (-)
C3H/HeJ ENSMUSG00175049951
 protein coding gene Chr15:72281316-72284821 (-)
C57BL/6NJ ENSMUSG00215050570
 protein coding gene Chr15:71986723-71990533 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0019889
 protein coding gene Chr15:69107070-69109432 (+)
CAST/EiJ no annotation
CBA/J ENSMUSG00210042234
 protein coding gene Chr15:72056649-72060154 (-)
CBA/J ENSMUSGG00210055079
 protein coding gene Chr15:71992197-71996753 (-)
DBA/2J ENSMUSG00185050623
 protein coding gene Chr15:72012202-72016012 (-)
FVB/NJ ENSMUSG00205040591
 protein coding gene Chr15:71758096-71761906 (-)
JF1/MsJ ENSUMUG00000044448
 protein coding gene Chr15:71647956-71651759 (-)
LP/J ENSMUSG00230052044
 protein coding gene Chr15:75376269-75380079 (-)
NOD/ShiLtJ no annotation
NZO/HlLtJ ENSMUSG00225050359
 protein coding gene Chr15:75640046-75643848 (-)
PWK/PhJ ENSLUMG00010050610
 protein coding gene Chr15:71928013-71931512 (-)
SPRET/EiJ no annotation
WSB/EiJ ENSIUOG00005049474
 protein coding gene Chr15:72060994-72064796 (-)



Homology
less
Human Diseases
less
  • References
    1 with disease annotations
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    26 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    7
  • GO References
    4
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    598
  • Tissues
    1
  • cDNA Data
    20
  • Literature Summary
    1
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 100041546 NCBI Gene Model | MGI Sequence Detail 3811 C57BL/6J ±  kb
transcript NM_001415998 RefSeq | MGI Sequence Detail 889 C57BL/6  
polypeptide P0CW03 UniProt | EBI | MGI Sequence Detail 131 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 21
    cDNA 20
    Primer pair 1
References
more
  • Summaries
    All 46
    Developmental Gene Expression 1
    Diseases 1
    Gene Ontology 4
    Phenotypes 26
  • Earliest
    J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17
  • Latest
    J:387680 Ahn B, et al., Disorganization of Transcriptional Regulation and Alteration of Keratin Family Gene Expression in Hairy Ear Mice. Genes (Basel). 2026 Jan 31;17(2)
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
09/08/2026
MGI 6.24 		The Jackson Laboratory